View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_19 (Length: 239)
Name: NF3919_high_19
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42912153 - 42911936
Alignment:
| Q |
1 |
tgaggttttattttcttaaacagatagatgcaaagttaagtatactgtgactgtgagatatatccaatgacaagaatccggcatgcattgcgtccaatat |
100 |
Q |
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| T |
42912153 |
tgaggttttattttcttaaacagatagatgcaaagttaaatatactgtgactgtgagatatatccaatgacaagaatccggcatgcattgcgtccaatat |
42912054 |
T |
|
| Q |
101 |
ggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttctatttacatttacagtaacactatatattattacttgtgtcgccatgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
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| T |
42912053 |
ggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttccatttacattgacagtaacacta---aatattacttgtgtcgccatgtat |
42911957 |
T |
|
| Q |
201 |
ttgactcctatgtcctatcct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42911956 |
ttgactcctatgtcctatcct |
42911936 |
T |
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