View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_20 (Length: 237)
Name: NF3919_high_20
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8534028 - 8533828
Alignment:
| Q |
1 |
ttggcttcgtggtcccaccattatgaaaggttcgtttctttccaaatttgatttctttatttttcaaatgtcgtcgttttgtttctaattgtcatgtttt |
100 |
Q |
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| T |
8534028 |
ttggcttcgtggtcccaccactatgaaaggttcgtttctttccaaatttgatttctttatttttcaaatgtcgtcgttttgtttctaattgtcatgtttt |
8533929 |
T |
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| Q |
101 |
tgatcctgaagatcgctctttgaataaacaattactagtagattagattggaaagacaaaaatccagatggatccacgaatttatatgctataatatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8533928 |
tgatcctgaagatcgctctttgaataaacaattactagtagattagattggaaagacaaaaatccagatggatccacgagtttatatgctataatatttt |
8533829 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
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| |
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| T |
8533828 |
g |
8533828 |
T |
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