View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3919_high_21 (Length: 232)

Name: NF3919_high_21
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3919_high_21
NF3919_high_21
[»] chr8 (27 HSPs)
chr8 (81-213)||(36638718-36638850)
chr8 (13-85)||(12710648-12710720)
chr8 (13-86)||(25837914-25837987)
chr8 (13-78)||(26601941-26602006)
chr8 (13-81)||(10896217-10896285)
chr8 (13-81)||(18726619-18726687)
chr8 (13-84)||(35818421-35818492)
chr8 (13-84)||(37392543-37392614)
chr8 (13-84)||(38132734-38132805)
chr8 (13-84)||(38364084-38364155)
chr8 (13-80)||(42755870-42755937)
chr8 (19-81)||(40197076-40197138)
chr8 (13-82)||(1554353-1554422)
chr8 (13-86)||(16313502-16313575)
chr8 (13-82)||(26062147-26062216)
chr8 (13-82)||(32660932-32661001)
chr8 (13-75)||(3050012-3050074)
chr8 (13-81)||(18298115-18298183)
chr8 (15-83)||(41228712-41228780)
chr8 (19-77)||(7931248-7931306)
chr8 (13-82)||(7317376-7317445)
chr8 (13-80)||(33444627-33444694)
chr8 (13-84)||(35394393-35394464)
chr8 (30-88)||(5020483-5020541)
chr8 (13-79)||(21137134-21137200)
chr8 (19-77)||(29421493-29421551)
chr8 (18-82)||(34672342-34672406)
[»] chr3 (23 HSPs)
chr3 (13-84)||(20297796-20297867)
chr3 (13-86)||(11239115-11239188)
chr3 (13-83)||(44952311-44952381)
chr3 (13-85)||(40908268-40908340)
chr3 (19-85)||(43715304-43715370)
chr3 (13-82)||(24574578-24574647)
chr3 (13-82)||(26849025-26849094)
chr3 (13-86)||(48339752-48339825)
chr3 (13-81)||(6231501-6231569)
chr3 (13-81)||(28124436-28124504)
chr3 (13-84)||(31435920-31435991)
chr3 (13-79)||(1099201-1099267)
chr3 (16-82)||(8476307-8476373)
chr3 (20-81)||(9320448-9320509)
chr3 (13-77)||(33217917-33217981)
chr3 (13-81)||(47114857-47114925)
chr3 (13-82)||(20414464-20414533)
chr3 (13-84)||(43132154-43132225)
chr3 (13-81)||(12228256-12228324)
chr3 (35-84)||(6831954-6832003)
chr3 (13-62)||(31611004-31611053)
chr3 (26-82)||(45826792-45826848)
chr3 (13-73)||(53165733-53165793)
[»] chr4 (33 HSPs)
chr4 (13-86)||(43723271-43723344)
chr4 (19-84)||(39498838-39498903)
chr4 (19-84)||(39502177-39502242)
chr4 (13-82)||(40435907-40435976)
chr4 (13-86)||(48518886-48518959)
chr4 (13-82)||(48879332-48879401)
chr4 (13-81)||(13229989-13230057)
chr4 (13-85)||(39730289-39730361)
chr4 (13-80)||(47670369-47670436)
chr4 (13-87)||(25932448-25932522)
chr4 (13-83)||(45747794-45747864)
chr4 (13-82)||(23686794-23686863)
chr4 (13-82)||(35999693-35999762)
chr4 (13-81)||(34049597-34049665)
chr4 (13-84)||(18405231-18405302)
chr4 (13-82)||(39835306-39835375)
chr4 (13-86)||(41859042-41859115)
chr4 (22-82)||(25916034-25916094)
chr4 (13-85)||(27555417-27555489)
chr4 (13-81)||(27762899-27762967)
chr4 (13-77)||(27942750-27942814)
chr4 (13-85)||(45596275-45596347)
chr4 (13-79)||(41744222-41744288)
chr4 (13-82)||(6279920-6279989)
chr4 (21-77)||(34237424-34237480)
chr4 (19-83)||(55967998-55968062)
chr4 (13-84)||(42773955-42774026)
chr4 (13-84)||(936133-936204)
chr4 (13-84)||(18931760-18931831)
chr4 (14-81)||(32953531-32953598)
chr4 (13-69)||(8322252-8322308)
chr4 (19-82)||(30415915-30415978)
chr4 (13-76)||(10400810-10400873)
[»] chr7 (32 HSPs)
chr7 (13-84)||(11329996-11330067)
chr7 (13-87)||(39554186-39554260)
chr7 (13-82)||(27213854-27213923)
chr7 (13-86)||(33378845-33378918)
chr7 (13-81)||(38544197-38544265)
chr7 (13-84)||(9946987-9947058)
chr7 (13-80)||(43949248-43949315)
chr7 (13-84)||(48314125-48314196)
chr7 (13-82)||(25924636-25924705)
chr7 (13-82)||(27419223-27419292)
chr7 (19-86)||(9814213-9814280)
chr7 (13-84)||(27248296-27248367)
chr7 (13-87)||(41632358-41632432)
chr7 (13-83)||(45045629-45045699)
chr7 (13-83)||(48160589-48160659)
chr7 (13-82)||(8419588-8419657)
chr7 (13-78)||(48341365-48341430)
chr7 (13-85)||(16825350-16825422)
chr7 (13-80)||(34930466-34930534)
chr7 (13-81)||(40212892-40212960)
chr7 (13-81)||(44566048-44566116)
chr7 (13-84)||(28904183-28904254)
chr7 (13-83)||(35488187-35488257)
chr7 (17-82)||(25098076-25098141)
chr7 (13-80)||(45265049-45265116)
chr7 (13-77)||(38396370-38396434)
chr7 (13-77)||(45448945-45449009)
chr7 (14-85)||(45723211-45723282)
chr7 (20-84)||(11000713-11000777)
chr7 (15-82)||(31921747-31921813)
chr7 (22-79)||(44820266-44820323)
chr7 (19-83)||(41684020-41684084)
[»] chr1 (33 HSPs)
chr1 (13-84)||(6978774-6978845)
chr1 (13-83)||(9115841-9115911)
chr1 (13-81)||(39930461-39930529)
chr1 (13-84)||(2430500-2430571)
chr1 (13-80)||(25789767-25789834)
chr1 (16-82)||(5806290-5806356)
chr1 (13-82)||(3572564-3572633)
chr1 (13-82)||(47037461-47037530)
chr1 (13-82)||(49822916-49822985)
chr1 (13-85)||(1597338-1597410)
chr1 (18-82)||(32202330-32202394)
chr1 (13-79)||(9831872-9831938)
chr1 (13-82)||(2632856-2632925)
chr1 (13-82)||(4683373-4683442)
chr1 (13-78)||(36361786-36361851)
chr1 (13-82)||(38964678-38964747)
chr1 (13-82)||(46666712-46666781)
chr1 (13-81)||(14788727-14788795)
chr1 (13-85)||(52630777-52630849)
chr1 (13-84)||(8332018-8332089)
chr1 (19-82)||(35187466-35187529)
chr1 (13-84)||(39329612-39329683)
chr1 (13-79)||(32824926-32824992)
chr1 (13-82)||(5518503-5518572)
chr1 (13-82)||(6911497-6911566)
chr1 (13-78)||(51445083-51445148)
chr1 (13-81)||(20260086-20260154)
chr1 (13-82)||(12190176-12190245)
chr1 (13-82)||(48916021-48916090)
chr1 (15-79)||(50190767-50190831)
chr1 (13-82)||(29091670-29091739)
chr1 (31-81)||(1007769-1007819)
chr1 (13-75)||(30241013-30241075)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-86)||(201928-202001)
[»] chr6 (10 HSPs)
chr6 (13-82)||(8029336-8029405)
chr6 (13-84)||(14171016-14171087)
chr6 (13-82)||(7053569-7053638)
chr6 (13-78)||(18897924-18897989)
chr6 (13-82)||(2657703-2657772)
chr6 (13-81)||(1317021-1317089)
chr6 (14-82)||(7344082-7344150)
chr6 (13-86)||(6705760-6705833)
chr6 (13-74)||(16968928-16968989)
chr6 (45-81)||(10246222-10246258)
[»] chr2 (34 HSPs)
chr2 (13-81)||(9733846-9733914)
chr2 (13-85)||(34356696-34356768)
chr2 (13-82)||(346344-346413)
chr2 (13-82)||(39995130-39995199)
chr2 (13-86)||(42674656-42674729)
chr2 (13-84)||(21737397-21737468)
chr2 (13-83)||(20426481-20426551)
chr2 (13-79)||(37192525-37192591)
chr2 (13-83)||(41729128-41729198)
chr2 (13-82)||(2521678-2521747)
chr2 (13-82)||(6171794-6171863)
chr2 (13-82)||(11071608-11071677)
chr2 (13-82)||(14777497-14777566)
chr2 (13-84)||(40950856-40950927)
chr2 (13-80)||(41750532-41750599)
chr2 (13-82)||(5770109-5770178)
chr2 (13-86)||(17965986-17966059)
chr2 (13-82)||(37533955-37534024)
chr2 (13-77)||(638596-638660)
chr2 (13-85)||(4559562-4559634)
chr2 (13-79)||(2050869-2050935)
chr2 (14-76)||(26310273-26310335)
chr2 (13-77)||(28311701-28311765)
chr2 (13-82)||(6571690-6571759)
chr2 (13-82)||(45409253-45409322)
chr2 (13-77)||(14832813-14832877)
chr2 (13-77)||(37233432-37233496)
chr2 (13-86)||(1988314-1988387)
chr2 (13-78)||(18713660-18713725)
chr2 (13-82)||(27357962-27358031)
chr2 (15-82)||(14403232-14403299)
chr2 (20-79)||(24499450-24499509)
chr2 (13-78)||(13760948-13761013)
chr2 (13-82)||(40570023-40570092)
[»] chr5 (18 HSPs)
chr5 (13-83)||(19065503-19065573)
chr5 (13-82)||(555705-555774)
chr5 (13-82)||(4765559-4765628)
chr5 (13-82)||(12970529-12970598)
chr5 (13-82)||(14206820-14206889)
chr5 (13-84)||(22935909-22935980)
chr5 (13-84)||(28602558-28602629)
chr5 (13-82)||(18412212-18412281)
chr5 (13-82)||(27481360-27481429)
chr5 (13-77)||(6091718-6091782)
chr5 (13-81)||(36703877-36703945)
chr5 (13-78)||(11855658-11855723)
chr5 (13-82)||(29543014-29543083)
chr5 (19-79)||(32535946-32536006)
chr5 (13-86)||(42012174-42012247)
chr5 (13-60)||(8646412-8646459)
chr5 (14-75)||(8406898-8406959)
chr5 (20-80)||(6930654-6930714)
[»] scaffold0189 (1 HSPs)
scaffold0189 (13-76)||(28957-29020)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 36638850 - 36638718
Alignment:
Q  81 ctaagtcatttacatgaagaaacaattataaaaataaactgaaaattattgaaacattgacattaaatcttgatgtatactaatactaaccaggtccaat 180  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36638850 ctaagtcatttacatgaagaaacaattataaaaattaactgaaaattattgaaacattgacattaagtcttgatgtatactaatactaaccaggtccaat 36638751  T
Q  181 aaaatattcgatgtcttaaaatcacgatagatg 213  Q
    |||||||||||||||||||||||||||||||||    
T  36638750 aaaatattcgatgtcttaaaatcacgatagatg 36638718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 12710648 - 12710720
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  12710648 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 12710720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 25837914 - 25837987
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||||||| |||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  25837914 cataggcatgtacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 25837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26602006 - 26601941
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  26602006 cataggcatatacattcctatcattttattcccgggaatcaacaattataatttgaaacaaacaca 26601941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 10896285 - 10896217
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||    
T  10896285 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacaccc 10896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 18726687 - 18726619
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  18726687 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 18726619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35818492 - 35818421
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  35818492 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 35818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 37392614 - 37392543
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||    
T  37392614 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaatacaccctaa 37392543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 38132805 - 38132734
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  38132805 catagacatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 38132734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 38364084 - 38364155
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  38364084 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 38364155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42755870 - 42755937
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||    
T  42755870 cataggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacacc 42755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 40197138 - 40197076
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  40197138 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacataccc 40197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 1554422 - 1554353
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  1554422 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 1554353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 16313575 - 16313502
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||| ||||||||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||    
T  16313575 cataggtatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaagt 16313502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26062147 - 26062216
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||| ||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  26062147 cataggaatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 26062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 32661001 - 32660932
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||||||||||||||||    
T  32661001 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 32660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3050012 - 3050074
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaac 75  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||    
T  3050012 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 3050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 18298115 - 18298183
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||| ||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||| ||||    
T  18298115 cataggtatatacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacaaaccc 18298183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 41228780 - 41228712
Alignment:
Q  15 taggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||| ||| ||||||||| |||||||| || |||||||| |||||||||||||||||||    
T  41228780 taggcatatacattcctaccattttattcccgggaattaacaattataacttgaaacaaacacacccta 41228712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7931248 - 7931306
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||    
T  7931248 catatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacac 7931306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 7317376 - 7317445
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||| ||||||||||||||  |  |||||| || ||||| ||||||||||||||||||    
T  7317376 cataggcatatatattcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccct 7317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 33444694 - 33444627
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    ||||| |||||| |||| ||||||||||||  | |||||||| || ||||| ||||||||||||||||    
T  33444694 catagacatatatatttttatcattttattctcaggaatcaacaaatataacttgaaacaaacacacc 33444627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 35394393 - 35394464
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||||| |||||| ||||||||||  || ||||||| || ||||| |||||||||||| |||||||    
T  35394393 catagacatatatatttctttcattttattctcgtgaatcaataaatataacttgaaacaaacaaaccctaa 35394464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 5020541 - 5020483
Alignment:
Q  30 ctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagtca 88  Q
    ||||||||||||| ||  ||||||| || ||||| ||||||||||||||| ||||||||    
T  5020541 ctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactctaagtca 5020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 21137200 - 21137134
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||| |||||||| ||||||||  | |||||||| || ||||| || ||||||||||||    
T  21137200 cataggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacacac 21137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29421551 - 29421493
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||| |||||||||||||||||  |  ||||||| || |||||||||||||||||||    
T  29421551 catatatatttctatcattttattctcatgaatcaacaaatataatttgaaacaaacac 29421493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 34672342 - 34672406
Alignment:
Q  18 gcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||| |||| ||||||||||||| | |||||||| || || || || |||||||||||||||    
T  34672342 gcatatatatttttatcattttattttcaggaatcaacaaatacaacttcaaacaaacacaccct 34672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 20297796 - 20297867
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  20297796 cataggcatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 20297867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 11239188 - 11239115
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  11239188 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 11239115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 44952311 - 44952381
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  44952311 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 44952381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 40908268 - 40908340
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  40908268 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 40908340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 43715370 - 43715304
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  43715370 catatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaag 43715304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 24574578 - 24574647
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  24574578 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26849025 - 26849094
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  26849025 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 26849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 48339825 - 48339752
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||||||||||||||| |||||||||||| |||| |||||| |||||||| |||||||||||||| |||||||    
T  48339825 cataggcatatacatttatatcattttattcccggaaatcaacaattataacttgaaacaaacacatcctaagt 48339752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 6231569 - 6231501
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||||||    
T  6231569 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccc 6231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 28124504 - 28124436
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||    
T  28124504 cataggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccc 28124436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 31435991 - 31435920
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||||||||||||||||||||||||||||  | |||||||| || ||||| ||||||||||||||||||||    
T  31435991 cataggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacaccctaa 31435920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 1099201 - 1099267
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||    
T  1099201 catagggatatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 1099267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 8476373 - 8476307
Alignment:
Q  16 aggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  8476373 aggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 9320509 - 9320448
Alignment:
Q  20 atatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  9320509 atatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 33217981 - 33217917
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||||||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||||    
T  33217981 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacac 33217917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 47114925 - 47114857
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| | ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  47114925 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 47114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20414533 - 20414464
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| | ||||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  20414533 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccct 20414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 43132225 - 43132154
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||| ||| |||| ||||||||  || ||||||| || ||||| ||||||||||||||||||||    
T  43132225 cataggcatatatattcctattattttattctcgagaatcaacaaatataacttgaaacaaacacaccctaa 43132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 12228324 - 12228256
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||| |||||||||||||||||  | ||||| || || |||| ||| ||||||||||||||    
T  12228324 cataggcatatatatttctatcattttattcgcaggaattaacaactatattttaaaacaaacacaccc 12228256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 6832003 - 6831954
Alignment:
Q  35 attttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||||||||| |||||| | || ||||| ||||||||||||||||||||    
T  6832003 attttatttccaggaatctacaaatataagttgaaacaaacacaccctaa 6831954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31611053 - 31611004
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattata 62  Q
    ||||| |||||||||| | ||||||||||| ||||||||||| |||||||    
T  31611053 catagacatatacattccaatcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 45826792 - 45826848
Alignment:
Q  26 atttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||||||| || |||||| | ||  |||| ||||||||||||||||||    
T  45826792 atttctatcattttattccctggaatctacaacgataacttgaaacaaacacaccct 45826848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 53165793 - 53165733
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaa 73  Q
    |||| ||||||| ||| ||||||||||||||  ||||||||| || ||||| |||||||||    
T  53165793 cataagcatatatattcctatcattttatttatgggaatcaacaaatataacttgaaacaa 53165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 43723271 - 43723344
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  43723271 cataggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaagt 43723344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 39498838 - 39498903
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  39498838 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39498903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 39502177 - 39502242
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  39502177 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39502242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 40435907 - 40435976
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  40435907 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 40435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 48518959 - 48518886
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  48518959 cataggcatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacacccaaagt 48518886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 48879332 - 48879401
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  48879332 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 48879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 13230057 - 13229989
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  13230057 cataggcatatacatttctatcattttattcccgggaataaaaaattataacttgaaacaaacacaccc 13229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 39730361 - 39730289
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  39730361 catagacatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaag 39730289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 47670369 - 47670436
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  47670369 cataggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacacc 47670436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 25932448 - 25932522
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagtc 87  Q
    |||||||||||||||||||||||||||||| |  |||||||| |||||||| |||||||||||||||||||||||    
T  25932448 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacaccctaagtc 25932522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 45747864 - 45747794
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  45747864 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 45747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 23686794 - 23686863
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  23686794 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 23686863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 35999693 - 35999762
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  35999693 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 35999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 34049665 - 34049597
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  34049665 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 34049597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 18405302 - 18405231
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||||||||||||||||||| ||||||||  |||||||||| |||||||| ||||||||||||||||||||    
T  18405302 cataggcatatacatttctataattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 18405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 39835375 - 39835306
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||| |||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  39835375 catatgcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 41859115 - 41859042
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||| | ||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||    
T  41859115 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaagt 41859042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 25916094 - 25916034
Alignment:
Q  22 atacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  25916094 atacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccct 25916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 27555417 - 27555489
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||    
T  27555417 catagacatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaag 27555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27762967 - 27762899
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  27762967 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 27762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 27942750 - 27942814
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  27942750 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacac 27942814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 45596275 - 45596347
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||||||||||||||||| |||  |||||| |||||||| ||||||||||| |||||||||    
T  45596275 cataggcatatacatttctatcattttattcccgaaaatcaacaattataacttgaaacaaacgcaccctaag 45596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 41744288 - 41744222
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||    
T  41744288 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaataaacacac 41744222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 6279989 - 6279920
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| ||||||||||  |||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  6279989 catagacatatacattcatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 6279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 34237480 - 34237424
Alignment:
Q  21 tatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  34237480 tatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacac 34237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 55968062 - 55967998
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  55968062 catatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 55967998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 42773955 - 42774026
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| || | |||||| |||||||| ||||||||||||||||||||    
T  42773955 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccctaa 42774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 936133 - 936204
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||| ||||| ||| | |||||||||||  |||||||||| |||||||| ||||||||||||||||||||    
T  936133 catagggatatatattccaatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 18931760 - 18931831
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||||||||| ||||||||||||| || | |||||| |||||||| ||||||||||||||| ||||    
T  18931760 catagacatatacattcctatcattttattcccagaaatcaacaattataacttgaaacaaacacactctaa 18931831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 32953531 - 32953598
Alignment:
Q  14 ataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||||||||||||| |||||||||| || | ||||||||| |||||||| |||| ||||||||||||    
T  32953531 ataggcatatacattcctatcattttgttcctgggaatcaacaattataacttgagacaaacacaccc 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 8322252 - 8322308
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaa 69  Q
    ||||| |||||||||||||||||||||||| || |||||||| |||||||| |||||    
T  8322252 catagacatatacatttctatcattttattcccaggaatcaacaattataacttgaa 8322308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 30415915 - 30415978
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||| ||| |||||||||||||  |||||||||| || ||||| ||||||||||||||||||    
T  30415915 catatatattcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccct 30415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 10400873 - 10400810
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaaca 76  Q
    ||||| |||||||||||||||||||||||| ||   |||||| || ||||| ||||||||||||    
T  10400873 catagacatatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaaca 10400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 11329996 - 11330067
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  11329996 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11330067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 39554186 - 39554260
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagtc 87  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||    
T  39554186 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttagtc 39554260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 27213923 - 27213854
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  27213923 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 27213854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 33378845 - 33378918
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  33378845 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 33378918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 38544197 - 38544265
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  38544197 cataggcatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 38544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 9947058 - 9946987
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  9947058 cataggcatatacattcctatcattttattcccgggaatcaaaaattataactttaaacaaacacaccctaa 9946987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 43949248 - 43949315
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  43949248 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 43949315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 48314125 - 48314196
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  48314125 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 48314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 25924705 - 25924636
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||    
T  25924705 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacataccct 25924636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 27419292 - 27419223
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||    
T  27419292 cataggcatatacatttctatcattttattcccgggaatcagcaattataacttgaaacaaacacaccct 27419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9814280 - 9814213
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  9814280 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 9814213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 27248296 - 27248367
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  27248296 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 27248367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 41632432 - 41632358
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagtc 87  Q
    ||||||||||||||||||||||||||||||  | |||||||| |||||||| |||||||||||||||| ||||||    
T  41632432 cataggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacaccttaagtc 41632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 45045629 - 45045699
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| || ||||||||||||||||    
T  45045629 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacacccta 45045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 48160659 - 48160589
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  48160659 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 48160589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 8419657 - 8419588
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  8419657 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 48341365 - 48341430
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  48341365 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48341430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 16825422 - 16825350
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||||||||||||||||| |  ||||| || |||||||| |||||||||||||||||||||    
T  16825422 cataggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacacaccctaag 16825350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 34930534 - 34930466
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataa-tttgaaacaaacacacc 80  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  34930534 cataggcatatacatttctatcattttattcccaggaatcaacaattataactttgaaacaaacacacc 34930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 40212892 - 40212960
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||    
T  40212892 cataggcatatacattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacacaccc 40212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 44566048 - 44566116
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||| |||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  44566048 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacacaccc 44566116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 28904254 - 28904183
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| ||||||||||||||||||||||||  |||||||||| |||||||| || |||||||||||||||||    
T  28904254 catagacatatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacaccctaa 28904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 35488257 - 35488187
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||| | ||||||||||| |||| |||||| |||||||| |||||||||||||||||||    
T  35488257 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacacccta 35488187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 25098076 - 25098141
Alignment:
Q  17 ggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||| ||||||||||||||||||    
T  25098076 ggcatatacattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacacaccct 25098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 45265116 - 45265049
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    |||||||||||||||| | ||||||||||| ||| ||||||| |||||||| ||||||||||||||||    
T  45265116 cataggcatatacattccaatcattttattcccgagaatcaacaattataacttgaaacaaacacacc 45265049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 38396434 - 38396370
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||||||||    
T  38396434 catagacatatacattcctatcattttattcccgggaatcaacaattataacttggaacaaacac 38396370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 45448945 - 45449009
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||| ||| |||||| ||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  45448945 catagacatctacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacac 45449009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 45723211 - 45723282
Alignment:
Q  14 ataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||||||||| ||| |||||||||||||  |||||||||| || ||||| |||||||||||||||| ||||    
T  45723211 ataggcatatatattcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccgtaag 45723282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 11000713 - 11000777
Alignment:
Q  20 atatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||| ||||||||||||||| |||||||| |  ||||| ||||||||||||||||||||    
T  11000713 atatatatttatatcattttatttccaggaatcaacatatataacttgaaacaaacacaccctaa 11000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 31921813 - 31921747
Alignment:
Q  15 taggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||| |||||||||||||||||||| | ||| || || ||||| ||||||||||||||||||    
T  31921813 taggcatatatatttctatcattttatttcc-gaaatgaacaaatataacttgaaacaaacacaccct 31921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 44820266 - 44820323
Alignment:
Q  22 atacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    ||||||||||||||||||||| | |  |||||| |||||||| |||||||||||||||    
T  44820266 atacatttctatcattttattcctgaaaatcaacaattataacttgaaacaaacacac 44820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 41684084 - 41684020
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||| ||||||||||| |||||  | |||||||| || ||||| |||||||||||||||||||    
T  41684084 catatatatttctatcatattattctcaggaatcaacaaatataacttgaaacaaacacacccta 41684020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 6978774 - 6978845
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  6978774 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 6978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 9115841 - 9115911
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  9115841 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 9115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 39930461 - 39930529
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  39930461 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 39930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 2430500 - 2430571
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  2430500 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 2430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 25789767 - 25789834
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  25789767 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 25789834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 5806356 - 5806290
Alignment:
Q  16 aggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  5806356 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 3572633 - 3572564
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  3572633 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 3572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 47037461 - 47037530
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  47037461 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 47037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 49822985 - 49822916
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  49822985 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 49822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1597410 - 1597338
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||    
T  1597410 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaag 1597338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32202394 - 32202330
Alignment:
Q  18 gcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||    
T  32202394 gcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 32202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 9831938 - 9831872
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||    
T  9831938 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 9831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 2632856 - 2632925
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| |||| |||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  2632856 cataggcatatacattcctattattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 4683442 - 4683373
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||| |||||||    
T  4683442 cataggcatatacattcctatcattttatttctgggaatcaacaattataaattgaaacaaagacaccct 4683373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 36361786 - 36361851
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  36361786 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 36361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 38964747 - 38964678
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  38964747 cataagcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaccccct 38964678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 46666712 - 46666781
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  46666712 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 46666781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 14788727 - 14788795
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||| |||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  14788727 catagacatatacattcctattattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 14788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 52630777 - 52630849
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||| |||||||||| ||||||||||||| || |||||||| |||||||| |||||||||||||||||||||    
T  52630777 catagacatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctaag 52630849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 8332018 - 8332089
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| |||| |||||| |||||||| ||||||||||||||||||||    
T  8332018 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 8332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 35187466 - 35187529
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||    
T  35187466 catatacatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacacaccct 35187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 39329612 - 39329683
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  39329612 catagacatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 32824926 - 32824992
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||||||| |||| ||||||||||||| |||||| |||||||| |||||||||||||||    
T  32824926 cataggcatatacattcctattattttatttccggaaatcaacaattataacttgaaacaaacacac 32824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 5518572 - 5518503
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||||||||||||||||| | ||||||||| || ||||| ||||||||||||||||||    
T  5518572 cataggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccct 5518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6911497 - 6911566
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||||||  |||||||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  6911497 cataggcatatacattcttatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 6911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 51445148 - 51445083
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||| |||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  51445148 cataggtatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 51445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 20260154 - 20260086
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| | ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  20260154 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 20260086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 12190245 - 12190176
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||| |||||| ||||||||||||| |||  |||||| |||||||| ||||||||||||||||||    
T  12190245 cataggcatgtacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaacacaccct 12190176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 48916090 - 48916021
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||||||||||||||||||||  | |||||||| || ||||| |||||| |||||||||||    
T  48916090 cataggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacacaccct 48916021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 50190831 - 50190767
Alignment:
Q  15 taggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||||| ||| |||||||||||||| ||| || |||||||  |||||||||||||||    
T  50190831 taggcatatacattcctagcattttatttccggaaattaacaattatatcttgaaacaaacacac 50190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 29091670 - 29091739
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||| |||| ||||||||||||  | |||||||| || ||||| ||||||||||||||||||    
T  29091670 catagacatatatatttttatcattttattatcaggaatcaacaaatataacttgaaacaaacacaccct 29091739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 1007769 - 1007819
Alignment:
Q  31 tatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||||||||||  |||||||||| || ||||| |||||||||||||||||    
T  1007769 tatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccc 1007819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 30241013 - 30241075
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaac 75  Q
    |||||||||||| ||||||||||||||||| ||   |||||| || ||||| |||||||||||    
T  30241013 cataggcatatatatttctatcattttattaccaaaaatcaacaaatataacttgaaacaaac 30241075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 201928 - 202001
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  201928 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 202001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 8029336 - 8029405
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  8029336 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 14171016 - 14171087
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14171016 cataggcatatagattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 14171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 7053638 - 7053569
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  7053638 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 7053569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 18897924 - 18897989
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  18897924 cataggcatatacatttctatcactttatttccgggaatcaacaattataacttgaaacaaacaca 18897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 2657703 - 2657772
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  2657703 cataggtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1317021 - 1317089
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  1317021 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 1317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 7344150 - 7344082
Alignment:
Q  14 ataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||||||||| |||||||||||||  ||| |||  | |||||||||||||||| ||||||||||    
T  7344150 ataggcatatacattcctatcattttattctcggaaatttacaattataatttgaaacgaacacaccct 7344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 6705833 - 6705760
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||| |||||| ||||||| ||||||||| |   ||||||| || ||||| ||||||||||||||||||||||    
T  6705833 catagacatatatatttctaccattttattccaatgaatcaacaaatataacttgaaacaaacacaccctaagt 6705760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 16968928 - 16968989
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaa 74  Q
    ||||| |||||| ||| |||||||||||||  | |||||||| |||||||| ||||||||||    
T  16968928 catagacatatagattcctatcattttattctcaggaatcaacaattataacttgaaacaaa 16968989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 10246258 - 10246222
Alignment:
Q  45 cgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||| |||||||| |||||||||||||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacacaccc 10246222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 9733914 - 9733846
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  9733914 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 34356768 - 34356696
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  34356768 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 34356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 346413 - 346344
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  346413 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 39995199 - 39995130
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  39995199 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 42674729 - 42674656
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  42674729 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagt 42674656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 21737468 - 21737397
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  21737468 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 21737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 20426551 - 20426481
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  20426551 cataggcatataaattcctatcattttattcccgggaatcaacaaatataatttgaaacaaacacacccta 20426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37192525 - 37192591
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  37192525 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 37192591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 41729198 - 41729128
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    ||||||||||| |||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  41729198 cataggcatatccattcctatcattttattcccgggaataaaaaattataacttgaaacaaacacacccta 41729128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 2521678 - 2521747
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| | |||||||||||| |||||||||| |||||||| ||||||||||||||||||    
T  2521678 cataggcatatacattccaatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 2521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6171794 - 6171863
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| |||||||||||||  |||||||||| |||||||| ||||||||||||||||||    
T  6171794 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccct 6171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 11071608 - 11071677
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  11071608 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 11071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 14777566 - 14777497
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  14777566 cataggcatatacattccaatcattttattcccgggaatcaacaattataaattgaaacaaacacaccct 14777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 40950927 - 40950856
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||| ||||||| ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  40950927 cataagcatatatatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 40950856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 41750532 - 41750599
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    |||||||||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||||||||    
T  41750532 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacacc 41750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 5770178 - 5770109
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||| |||||||||||| |||||    
T  5770178 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacataccct 5770109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 17965986 - 17966059
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||| |||||||||| | |||||||||||  |||||||||| |||||||| ||||||||||||||||||||||    
T  17965986 catagacatatacattccaatcattttattatcgggaatcaacaattataacttgaaacaaacacaccctaagt 17966059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 37533955 - 37534024
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||||||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  37533955 catagacatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 37534024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 638596 - 638660
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||| |||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||    
T  638596 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacac 638660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 4559562 - 4559634
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaag 85  Q
    |||||||||||||||| | |||||||||||   ||||||||| |||||||| |||||||||||||||||||||    
T  4559562 cataggcatatacattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacaccctaag 4559634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 2050869 - 2050935
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||| ||||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||||    
T  2050869 cataggtatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 2050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 26310273 - 26310335
Alignment:
Q  14 ataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaaca 76  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||    
T  26310273 atagacatatacatttctatcattttattcccgggaatcaacaattataactttaaacaaaca 26310335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 28311765 - 28311701
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || ||||| |||||||||||||    
T  28311765 cataggcatatatattcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 28311701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6571690 - 6571759
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||| ||| |||||||||||||||||| |||||| || ||||| || ||||||| |||||||    
T  6571690 cataggcatatatattcctatcattttatttccggaaatcaacaaatataactttaaacaaatacaccct 6571759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 45409253 - 45409322
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||    ||||||||| || ||||| ||||||||||||||||||    
T  45409253 cataggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccct 45409322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14832813 - 14832877
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    |||||||||||| ||||||||||||||||| |  |||||||| || ||||| |||||||||||||    
T  14832813 cataggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaacac 14832877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 37233432 - 37233496
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||||||||||  || ||||||||||||| ||||||||||| || ||||| |||||||||||||    
T  37233432 cataggcatatatgttcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 37233496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 1988314 - 1988387
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||||||| || ||||||||||||||||| || | |||||| || ||||| || |||||||||||||| ||||    
T  1988314 cataggcatgtatatttctatcattttattcccagaaatcaacaaatataacttcaaacaaacacacccaaagt 1988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 18713725 - 18713660
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||||||||| |||| |||||||||||| ||  ||||||| || ||||| ||||||||||||||    
T  18713725 cataggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaacaca 18713660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 27358031 - 27357962
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||||||  ||||||||||||  | ||||||||| || ||||| ||||||||||||||||||    
T  27358031 catagacatatacatccctatcattttatacctgggaatcaacaaatataacttgaaacaaacacaccct 27357962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 14403299 - 14403232
Alignment:
Q  15 taggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||| || |||| ||||||||||||||| |||||||| || || || || |||||||||||||||    
T  14403299 taggcatgtatatttttatcattttatttccaggaatcaacaaatacaacttcaaacaaacacaccct 14403232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24499450 - 24499509
Alignment:
Q  20 atatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    ||||| |||||||||||||||||||   ||||||| || ||||| |||||||||||||||    
T  24499450 atatatatttctatcattttatttctatgaatcaacaaatataacttgaaacaaacacac 24499509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 13760948 - 13761013
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||| | ||| ||| ||||||||||||| |||  |||||| |||||||| ||||||||||||||    
T  13760948 cataggtacatatattcctatcattttattcccgaaaatcaataattataacttgaaacaaacaca 13761013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 40570023 - 40570092
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||||||| ||  ||| ||| |||||||| || |||||| | |||||||| ||||||||||||||||||    
T  40570023 cataggcatgtatgtttttatgattttattcccaggaatctacaattataacttgaaacaaacacaccct 40570092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 19065573 - 19065503
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacccta 83  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  19065573 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 19065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 555774 - 555705
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  555774 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 4765628 - 4765559
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  4765628 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 4765559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 12970598 - 12970529
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  12970598 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 12970529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 14206889 - 14206820
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  14206889 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 14206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 22935980 - 22935909
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  22935980 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 22935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 28602558 - 28602629
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaa 84  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  28602558 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 28602629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 18412212 - 18412281
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||||||||||||||||    
T  18412212 cataggcatatacattcctatcattttattcccaggaatcaataattataacttgaaacaaacacaccct 18412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 27481360 - 27481429
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    |||||||||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||||||||    
T  27481360 cataggcatatacattcctatcattttatttccaaaaatcaaaaattataacttgaaacaaacacaccct 27481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 6091718 - 6091782
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacac 77  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||    
T  6091718 cataggcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacac 6091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 36703877 - 36703945
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccc 81  Q
    ||||| |||||||||||||||||||||||| |||  |||||| |||||||| |||||||||||||||||    
T  36703877 catagacatatacatttctatcattttattcccgataatcaacaattataacttgaaacaaacacaccc 36703945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 11855723 - 11855658
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacaca 78  Q
    |||||||||||||||| |||||||||||||  | |||||||| |||||||| ||||||||||||||    
T  11855723 cataggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaacaca 11855658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29543083 - 29543014
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccct 82  Q
    ||||| |||||||||| | ||||||||||| || |||||||| |||||||| ||||||||||||||||||    
T  29543083 catagacatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 29543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 32535946 - 32536006
Alignment:
Q  19 catatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacac 79  Q
    |||||||||||||||||||||||| | ||||||||| |||||||| || ||||||||||||    
T  32535946 catatacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacac 32536006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 42012247 - 42012174
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacaccctaagt 86  Q
    ||||| |||||  ||||||||||||||||| ||| ||||||| || ||||  || |||||||||||||||||||    
T  42012247 catagacatatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacaccctaagt 42012174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 8646459 - 8646412
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaatta 60  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||||    
T  8646459 catagacatatacattcctatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 8406898 - 8406959
Alignment:
Q  14 ataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaac 75  Q
    |||||||| |||||| |||||||||||||  ||  |||||| |||||||| |||||||||||    
T  8406898 ataggcatgtacattcctatcattttattctcgaaaatcaacaattataacttgaaacaaac 8406959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 6930654 - 6930714
Alignment:
Q  20 atatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaacacacc 80  Q
    ||||| |||||||||||||||||  | |||||||| || ||||| |||||| |||||||||    
T  6930654 atatatatttctatcattttattctcaggaatcaacaaatataacttgaaataaacacacc 6930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 29020 - 28957
Alignment:
Q  13 cataggcatatacatttctatcattttatttccgggaatcaaaaattataatttgaaacaaaca 76  Q
    |||||||||||||||| ||||||||||||| |||  |||||| |||||||| ||||||||||||    
T  29020 cataggcatatacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaaca 28957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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