View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_3 (Length: 595)
Name: NF3919_high_3
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 194 - 581
Target Start/End: Original strand, 36170857 - 36171231
Alignment:
| Q |
194 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaa |
293 |
Q |
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| T |
36170857 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaa |
36170956 |
T |
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| Q |
294 |
agagaaacatatcagtcagccagaagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgttt |
393 |
Q |
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| T |
36170957 |
agagaaacatatcagtcagccagaagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgttt |
36171056 |
T |
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| Q |
394 |
cgacaggtatggttatgcatgagccaatcaagtttgtgtaataaatcagacaaacaatgttgttactatgattagcaccttcctgttaaaattgtaaata |
493 |
Q |
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| T |
36171057 |
cgacaggtatggttatgcatgagccaatcaagtttgtgtaataaatcagacaaacaatgttgttactatgattagcaccttcctgttaaaattgtaaata |
36171156 |
T |
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| Q |
494 |
tttgatcttgtttcaagttataatctgtaatttatattcaatataactatcctcttcatagactttgcacatgaacaagttctttgtg |
581 |
Q |
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| T |
36171157 |
gttgatcttgtttcaagttataatctgtaattta-------------tatcctcttcatagactttgcacatgaacaagttctttgtg |
36171231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 36170672 - 36170786
Alignment:
| Q |
9 |
agcaaaggttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaag |
108 |
Q |
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| T |
36170672 |
agcaaaggttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaag |
36170771 |
T |
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| Q |
109 |
atggttactaaggtt |
123 |
Q |
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|||| |||||||||| |
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| T |
36170772 |
atggctactaaggtt |
36170786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 407
Target Start/End: Original strand, 5294798 - 5294988
Alignment:
| Q |
217 |
ttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaaagagaaacatatcagtcagccag |
316 |
Q |
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||||||||||||||||| | || ||||| | ||||| | || ||||||||||||||||||||||||||||| |||||||||| || ||| || ||| |
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| T |
5294798 |
ttagatagttttgctgtgattaaatgttcatcaaatccaaagcaggattttagagattcaatgattgagatgattgaagagaaacagattagtaaggcag |
5294897 |
T |
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| Q |
317 |
aagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgtttcgacaggtatggtt |
407 |
Q |
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| T |
5294898 |
aagaaatggaagagttgttggcatgttatttgactttgaatgctgatgagtatcatgatctcataatcaaagtatttaggcaggtatggtt |
5294988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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