View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_4 (Length: 569)
Name: NF3919_high_4
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 44688430 - 44687875
Alignment:
| Q |
1 |
aacttatattaatatgtaagttcaaaagctacatgtaactgcgtgttttttgtcctgttaagaattcagatcccttgctaaattcttaatcatgggctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| || | |||| |
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| T |
44688430 |
aacttatattaatatgtaagttcaaaagctacgtgtaactgcgtgttttttgtcctgtcgagaattcaaatctcttgctaaattcttaattattgactaa |
44688331 |
T |
|
| Q |
101 |
tcacactatggtaaactactcatttatgttagacttaatgcggattgattctttaaataatcactcattaataacttgcaatctttagttttttagagcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44688330 |
tcacactatggtaaactactcatttatgttagacttaatacgaattgattctttaaataattactcattaataacttgcaatctttagttttttagagcg |
44688231 |
T |
|
| Q |
201 |
atttacatttttaatttagatcggtttgaatatgaatgttacacccc-actcttttatgttaattagtattagtactatgatatcaacatgttacaccct |
299 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688230 |
atttacatttttaatttagatcggtttgaatatcaatgttacacccccactcttttatgttaattagtattagtactatgatatcaacatgttacaccct |
44688131 |
T |
|
| Q |
300 |
cactcttttattttagttagtactataaaacaaacgagatattttaaaacaaacttcaaattggaagtgtaccagcacttgtattggtcaaattttaatg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688130 |
cactcttttattttagttagtactataaaacaaacgagatattttaaaacaaacttcaaattggaagtgtaccagcacttgtattggtcaaattttaatg |
44688031 |
T |
|
| Q |
400 |
caaaattaagatatttacttcacttatcctaggttatcctaggtattgtagtttttgcgggtataaatcctttgcccattttgatcattccttacgagct |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44688030 |
caaaattaagatatttacttcacttatcctaggttatcctaggtattgtagtttttgcgggtataaatcctttgcccattttgatcattcctttcgagct |
44687931 |
T |
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| Q |
500 |
ctgcctcatagacacgtttgacattattggatggattagtgggcccatgccatgcc |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44687930 |
ctgcctcatagacacgtttgacattattggatggattagtgggcccatgccatgcc |
44687875 |
T |
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