View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_5 (Length: 493)
Name: NF3919_high_5
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 335 - 477
Target Start/End: Complemental strand, 10463603 - 10463461
Alignment:
| Q |
335 |
aaagaataacataataaaagatcatataaaatttcaatcacattttcttccactctcccccatccaaaacattcatttgtagtgtcgttgatacccactc |
434 |
Q |
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| T |
10463603 |
aaagaataacataataaaagatcatataaaatttcaatcacattttcttccactctcccccatccaaaacattcatttgtagtgtcgttgatacccactc |
10463504 |
T |
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| Q |
435 |
ggtcacctttagtcaagtcatcgatgttgatacgactattgtg |
477 |
Q |
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| T |
10463503 |
ggtcacctttagtcaagtcatcgatgttgatacgactattgtg |
10463461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 10463791 - 10463640
Alignment:
| Q |
148 |
ctcatcagggttaacagggaattaacttagctttaggttacctatttnnnnnnnncaattttatgtgaagttctatgggaaaagagttgagtttgaaagg |
247 |
Q |
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| T |
10463791 |
ctcatcagggttaacagggaattaacttagctttaggttacctatttaaaaaaaacaattttatgtgaagttctatgggaaaagagttgagtttgaaagg |
10463692 |
T |
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| Q |
248 |
gaattaaaatctctaagaatgtatttggatgactactattat-aagggttag |
298 |
Q |
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| T |
10463691 |
gaattaaaatctctaagaatgtatttggatgactactattatcaagggttag |
10463640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 10463924 - 10463895
Alignment:
| Q |
16 |
gagcagagaggctattacacattttggcag |
45 |
Q |
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| T |
10463924 |
gagcagagaggctattacacattttggcag |
10463895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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