View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_high_6 (Length: 457)
Name: NF3919_high_6
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 345 - 447
Target Start/End: Complemental strand, 40739786 - 40739684
Alignment:
| Q |
345 |
gttaagacaaataatgttaaggatgtttgatgtaatgatggtggctccaagtgccagcaagacagttcaagctacaacagccattgagtgattgccacct |
444 |
Q |
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| T |
40739786 |
gttaagacaaataatgttaaggatgtttgatgtaatgatggtggctccaagtgccagcaagacagttcaagctacaacagccattgagtgattgccacct |
40739687 |
T |
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| Q |
445 |
ttg |
447 |
Q |
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| T |
40739686 |
ttg |
40739684 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 40740003 - 40739940
Alignment:
| Q |
130 |
cacaaacctgtggttttgtaagtgttttttggaagagttaatgatttgacccgttgaaaccggg |
193 |
Q |
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| T |
40740003 |
cacaaacctgtggttttgtaagtgttttttggaagagttaatgatttgacccgttgaaaccggg |
40739940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 40740116 - 40740067
Alignment:
| Q |
17 |
aatagagagaagataaagaggaaatgacaagggacatacctggatctatg |
66 |
Q |
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| T |
40740116 |
aatagaaagaagataaagaggaaatgacaagggacatacctggatctatg |
40740067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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