View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3919_high_9 (Length: 365)

Name: NF3919_high_9
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3919_high_9
NF3919_high_9
[»] chr5 (2 HSPs)
chr5 (1-357)||(21249134-21249493)
chr5 (10-127)||(21263276-21263393)
[»] chr2 (15 HSPs)
chr2 (240-357)||(16973079-16973195)
chr2 (251-357)||(2916404-2916509)
chr2 (243-357)||(38982773-38982886)
chr2 (240-357)||(44594454-44594570)
chr2 (242-357)||(16973280-16973394)
chr2 (238-356)||(40987670-40987787)
chr2 (251-320)||(24126176-24126244)
chr2 (240-357)||(40987862-40987978)
chr2 (240-344)||(44594263-44594367)
chr2 (251-356)||(24125876-24125974)
chr2 (292-348)||(16973213-16973269)
chr2 (251-357)||(38982583-38982688)
chr2 (276-356)||(13559354-13559434)
chr2 (292-348)||(13559445-13559501)
chr2 (292-320)||(24125829-24125857)
[»] chr1 (13 HSPs)
chr1 (238-357)||(10824585-10824703)
chr1 (242-357)||(18844476-18844590)
chr1 (251-357)||(22683167-22683272)
chr1 (242-356)||(37189565-37189678)
chr1 (246-351)||(37189388-37189492)
chr1 (244-357)||(19056169-19056281)
chr1 (240-354)||(10824383-10824496)
chr1 (244-344)||(18844677-18844777)
chr1 (240-357)||(15825737-15825851)
chr1 (238-357)||(19056367-19056485)
chr1 (291-357)||(22683357-22683423)
chr1 (292-348)||(19056292-19056348)
chr1 (292-335)||(22683290-22683333)
[»] chr8 (14 HSPs)
chr8 (240-357)||(13884504-13884620)
chr8 (243-357)||(2554066-2554179)
chr8 (240-356)||(42126601-42126716)
chr8 (240-357)||(29714557-29714673)
chr8 (240-356)||(42126397-42126512)
chr8 (240-355)||(13884706-13884820)
chr8 (242-357)||(29714758-29714872)
chr8 (246-357)||(11867898-11868008)
chr8 (298-348)||(14996614-14996664)
chr8 (269-357)||(15862540-15862628)
chr8 (297-348)||(2554004-2554055)
chr8 (292-347)||(42126532-42126587)
chr8 (285-354)||(14996678-14996748)
chr8 (244-308)||(34616143-34616206)
[»] chr7 (11 HSPs)
chr7 (244-357)||(6474299-6474412)
chr7 (243-357)||(41985928-41986041)
chr7 (240-356)||(28715657-28715772)
chr7 (281-357)||(30862436-30862512)
chr7 (241-348)||(30862234-30862340)
chr7 (240-357)||(28715858-28715974)
chr7 (242-356)||(47373679-47373792)
chr7 (285-357)||(47373523-47373595)
chr7 (292-335)||(41986065-41986108)
chr7 (244-357)||(6474497-6474608)
chr7 (271-307)||(33341338-33341374)
[»] chr4 (8 HSPs)
chr4 (240-357)||(55173469-55173585)
chr4 (244-344)||(50509357-50509456)
chr4 (281-357)||(39161343-39161419)
chr4 (281-356)||(37996120-37996195)
chr4 (238-357)||(39161503-39161621)
chr4 (238-348)||(55173347-55173457)
chr4 (305-354)||(50509278-50509327)
chr4 (244-328)||(47096819-47096900)
[»] chr3 (10 HSPs)
chr3 (238-357)||(51663466-51663584)
chr3 (238-356)||(40244638-40244756)
chr3 (242-356)||(20537943-20538056)
chr3 (281-357)||(51663305-51663381)
chr3 (240-357)||(20538150-20538266)
chr3 (242-356)||(46003465-46003578)
chr3 (244-357)||(40364060-40364172)
chr3 (242-348)||(40364183-40364287)
chr3 (292-348)||(46003390-46003446)
chr3 (240-357)||(46003263-46003379)
[»] chr6 (10 HSPs)
chr6 (240-356)||(11643764-11643879)
chr6 (244-335)||(24798860-24798950)
chr6 (238-352)||(2216799-2216912)
chr6 (243-356)||(18494949-18495061)
chr6 (241-357)||(24798641-24798756)
chr6 (240-349)||(11643973-11644080)
chr6 (292-348)||(11643898-11643954)
chr6 (240-320)||(24690370-24690449)
chr6 (291-335)||(24798778-24798822)
chr6 (242-356)||(18494751-18494862)
[»] scaffold0781 (1 HSPs)
scaffold0781 (238-352)||(5256-5369)
[»] scaffold0060 (1 HSPs)
scaffold0060 (240-357)||(22921-23037)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 21249134 - 21249493
Alignment:
Q  1 ttggtcagatgtttgttgtctctgatgatcaaaaattagaatgggcagatcttttcctcattacaacacttccattagatgaaaggaatcctcgattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  21249134 ttggtcagatgtttgttgtctctgatgatcaaaaattagaatgggcagatctttttctcattaccacacttccattagatgaaaggaatcctcgcttatt 21249233  T
Q  101 tccaagtattttccaaccatttaggttgttttctactctctcaataattgatgtttatattact-aacaaattcaaataacaacagaaattagagaagga 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||    
T  21249234 tccaagtattttccaaccatttaggttgttttctactctctcaataattgatgtttattttactaaaaaaattgaaataacaacagaaattagagaagga 21249333  T
Q  200 aaaataaaattaacacttacnnnnnnnnnncttattcaat---ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtat 296  Q
    ||||||||||||||||||||          ||||||||||   | ||||||||  | ||||||||| |||| |||||| || | ||| |||||||||||     
T  21249334 aaaataaaattaacacttactttttttcggcttattcaatcacctggtcccttaccgtaattgattgtctc-aatttggtcccctaattataaattgtac 21249432  T
Q  297 caatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    |||||| |||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  21249433 caatttagtcccctatgttttgcttcgttactagttttaatcctttctgttagtttctctc 21249493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 21263276 - 21263393
Alignment:
Q  10 tgtttgttgtctctgatgatcaaaaattagaatgggcagatcttttcctcattacaacacttccattagatgaaaggaatcctcgattatttccaagtat 109  Q
    |||||||||| |||||  ||||||| ||||||||||| ||| | ||| |||||||||| || ||||   ||| ||||||| | || ||||||||||  ||    
T  21263276 tgtttgttgtatctgagaatcaaaagttagaatgggctgatttattcttcattacaactctgccatcctatgcaaggaattcccgcttatttccaaacat 21263375  T
Q  110 tttccaaccatttaggtt 127  Q
    |  ||||||||| |||||    
T  21263376 tccccaaccattcaggtt 21263393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 16973079 - 16973195
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| ||| || |||| || | ||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||||||     
T  16973079 ccggtcccttaacttaattgattgtcttaa-tttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttactagttttaattc 16973177  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  16973178 tttctgttagtttctctc 16973195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 2916404 - 2916509
Alignment:
Q  251 acttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagt 350  Q
    |||||||||||| |||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||  |||||||||||    
T  2916404 acttaattgattgtctcaa-tttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttactagttttaatcctttctgttagt 2916502  T
Q  351 ttctctc 357  Q
    |||||||    
T  2916503 ttctctc 2916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 38982886 - 38982773
Alignment:
Q  243 gtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttttt 342  Q
    ||||||| |||||||||||| |||||| |||| || | ||||||||| ||||||||||||||| || ||||||||||||| |||||| ||||| |  |||    
T  38982886 gtcccttaacttaattgattgtctcaa-tttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcattt 38982788  T
Q  343 ctgttagtttctctc 357  Q
    ||| |||||||||||    
T  38982787 ctggtagtttctctc 38982773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 44594570 - 44594454
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    ||||||| || | |||||||||| |||||| |||| || | ||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| |      
T  44594570 ccggtcctttaatttaattgattgtctcaa-tttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttactagttttagtca 44594472  T
Q  340 tttctgttagtttctctc 357  Q
    |||||| |||||||||||    
T  44594471 tttctggtagtttctctc 44594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 16973394 - 16973280
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| |||||| |||| || | ||||||||| |||| |||||||||||| |||||||||||| | |||||| ||||| |  ||    
T  16973394 ggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattactagttttagtcatt 16973296  T
Q  342 tctgttagtttctctc 357  Q
    ||||| ||||||||||    
T  16973295 tctgtcagtttctctc 16973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 40987670 - 40987787
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| |||||| || | || | ||||||||| ||||| |||||| ||| | ||||||||| || ||||||| ||||| |    
T  40987670 atccggtcccttaacttaattgattgtctcaatttggttccc-taactataatttgtaccaatttagtctcatatgttttgatttgttactagttttagt 40987768  T
Q  338 tttttctgttagtttctct 356  Q
     |||| |||||||||||||    
T  40987769 cttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 24126244 - 24126176
Alignment:
Q  251 acttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgct 320  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||| |||||||||||| |||||||||||    
T  24126244 acttaattgattttctcaa-tttggtctcctaactataatttgtaccaatttggtcccttatgttttgct 24126176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 40987978 - 40987862
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||| ||| |||||||| ||| |||||| |||||||   ||||||||| |||||| ||||||||||||||| |||||||   || ||||||||| |      
T  40987978 ccggtctcttaacttaattaattgtctcaa-tttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaattttagtca 40987880  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  40987879 tttctgttagtttctctc 40987862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 44594263 - 44594367
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctca-taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatt 338  Q
    |||||||||| |||||||||||| |||||| |||| | ||  ||||||||| ||||||||||||||||| ||||||||||||  ||||||| ||||| ||    
T  44594263 ccggtcccttaacttaattgattgtctcaa-tttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgttactagttttagtt 44594361  T
Q  339 ttttct 344  Q
     |||||    
T  44594362 ctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 24125974 - 24125876
Alignment:
Q  251 acttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagt 350  Q
    |||||||| |||||||||| |||| |||| ||||||||| ||||| |||||||||||| |||||||||||      ||| ||||| || |||||||||||    
T  24125974 acttaattaattttctcaa-tttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 16973213 - 16973269
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    |||| |||||||||||||||||||||||| |||||||| ||||| |  |||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctgtta 16973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 38982583 - 38982688
Alignment:
Q  251 acttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagt 350  Q
    |||||||||||| |||||| || | || | ||||||||| ||||| ||||||||||   |||||||||||||||| ||| ||||| |  ||||| |||||    
T  38982583 acttaattgattgtctcaatttggctccc-taactataatttgtaccaatttggtcatttatgttttgcttcgttgctagttttagtcctttctattagt 38982681  T
Q  351 ttctctc 357  Q
    | |||||    
T  38982682 tactctc 38982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 13559354 - 13559434
Alignment:
Q  276 tctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctct 356  Q
    |||| ||||||||| |||| ||||||||||| | ||| ||||| || |||| || ||||| |  |||||||||||||||||    
T  13559354 tctcctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 13559501 - 13559445
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    ||||| |||||||||| ||||||||||||  ||| |||||||||||  |||||||||    
T  13559501 tgtattaatttggtcctctatgttttgctctgttgctaattttaatcatttctgtta 13559445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 24125857 - 24125829
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgct 320  Q
    |||||||||||||||||||||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgct 24125829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 10824703 - 10824585
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| |||||| |||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |    
T  10824703 atccggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagt 10824605  T
Q  338 tttttctgttagtttctctc 357  Q
      |||||  |||||||||||    
T  10824604 cctttctagtagtttctctc 10824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 18844476 - 18844590
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| |||||| |||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |  ||    
T  18844476 ggtcccttaacttaattgattatctcaa-tttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatt 18844574  T
Q  342 tctgttagtttctctc 357  Q
    |||| |||||||||||    
T  18844575 tctggtagtttctctc 18844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 22683167 - 22683272
Alignment:
Q  251 acttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagt 350  Q
    |||||||||||| |||||| |||| || | ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |  |||||||||||    
T  22683167 acttaattgattgtctcaa-tttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttactagttttagtcctttctgttagt 22683265  T
Q  351 ttctctc 357  Q
    |||||||    
T  22683266 ttctctc 22683272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 37189678 - 37189565
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| |||||| |||| || | || |||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |  ||    
T  37189678 ggtcccttaacttaattgattgtctcaa-tttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcatt 37189580  T
Q  342 tctgttagtttctct 356  Q
    |||| ||||||||||    
T  37189579 tctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 37189388 - 37189492
Alignment:
Q  246 ccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctg 345  Q
    |||| |||||||||||| |||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||| |||||||| ||||| |  ||||||    
T  37189388 ccttaacttaattgattgtctcaa-tttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctg 37189486  T
Q  346 ttagtt 351  Q
    ||||||    
T  37189487 ttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 19056169 - 19056281
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttc 343  Q
    |||||| |||||||||||| | | || |||| || | ||| ||||| |||||||||||||||||||||| |||||||| ||||||| ||||| | |||||    
T  19056169 tcccttaacttaattgattgtattaa-tttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttactagttttagtcttttc 19056267  T
Q  344 tgttagtttctctc 357  Q
    ||||||||||||||    
T  19056268 tgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 10824383 - 10824496
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    ||||||| || |||||||||||| |  ||| |||| || | ||| ||||| ||||||||||||||||| |||||||||||| |||||||| ||||| |      
T  10824383 ccggtcctttaacttaattgattattgcaa-tttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcc 10824481  T
Q  340 tttctgttagtttct 354  Q
    |||||||||||||||    
T  10824482 tttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 18844777 - 18844677
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctca-taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttttt 342  Q
    |||||| |||||||||||| |||||| |||| | ||  ||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||| || |||    
T  18844777 tcccttaacttaattgattgtctcaa-tttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgttactagttttagttcttt 18844679  T
Q  343 ct 344  Q
    ||    
T  18844678 ct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 15825851 - 15825737
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||| ||| |||||||||||| |||||| || |   || ||||||||| ||||| ||||||||||||||||||||||||| |||| || ||||| |      
T  15825851 ccggtctcttaacttaattgattgtctcaatttgg---tcctaactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagtcc 15825755  T
Q  340 tttctgttagtttctctc 357  Q
    ||| | ||||||||||||    
T  15825754 tttttattagtttctctc 15825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 19056485 - 19056367
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| | | || |||| || | |||||||||  |||| |||||||||  |||||||||||||| ||||||| ||||| |    
T  19056485 atccggtcccttaacttaattgattgttttaa-tttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttactagttttagt 19056387  T
Q  338 tttttctgttagtttctctc 357  Q
      ||||||| ||||||||||    
T  19056386 catttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 22683423 - 22683357
Alignment:
Q  291 ttgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||| ||||||||||| |||||||||||| |||||||| ||||| |  ||||| ||||||||||||    
T  22683423 ttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctc 22683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 19056348 - 19056292
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    |||| |||||||||||||| |||||||||||||||||| ||| | | ||||||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctgtta 19056292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 22683290 - 22683333
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaatttta 335  Q
    |||| |||||||||||||||||||||||| |||||||| |||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagtttta 22683333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 13884504 - 13884620
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| |||| || | ||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| | |    
T  13884504 ccggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttactagttttagtct 13884602  T
Q  340 tttctgttagtttctctc 357  Q
    |||||| |||||||||||    
T  13884603 tttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 2554179 - 2554066
Alignment:
Q  243 gtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttttt 342  Q
    ||||||| |||||||||||| |||||| ||||||| | ||||||||| ||||  |||||||||| |||||||||||||| ||||||  ||||| || |||    
T  2554179 gtcccttaacttaattgattgtctcaa-tttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttcttt 2554081  T
Q  343 ctgttagtttctctc 357  Q
    |||||||||||||||    
T  2554080 ctgttagtttctctc 2554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 42126716 - 42126601
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| ||||||| | ||||||||| ||||| ||||||||||| ||| ||||||||  || |||||||||| |      
T  42126716 ccggtcccttaacttaattgattatctcaa-tttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcactaattttagtca 42126618  T
Q  340 tttctgttagtttctct 356  Q
    |||||||||||||||||    
T  42126617 tttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 29714557 - 29714673
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| |||| || |  |||||||  ||||| |||||||||||||||| |||||||| |||||||  ||||||      
T  29714557 ccggtcccttaacttaattgattgtctcaa-tttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttactagctttaatca 29714655  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  29714656 tttctgttagtttctctc 29714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 42126397 - 42126512
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgat-ctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatt 338  Q
    |||||||||| |||||||| ||| |||||| |||||| ||| ||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||| |     
T  42126397 ccggtcccttaacttaattaattgtctcaa-tttgattctc-taactataatttgtatcaatttggccccctatgttttgcttcgctactagttttagtc 42126494  T
Q  339 ttttctgttagtttctct 356  Q
     |||||| ||||||||||    
T  42126495 ctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 13884820 - 13884706
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| || | || | ||||||||| ||||| ||||||||||| ||||||||||||||||||||  ||||| |      
T  13884820 ccggtcccttaacttaattgattgtctcaatttag-tcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttactggttttagtcc 13884722  T
Q  340 tttctgttagtttctc 355  Q
    ||| ||||||||||||    
T  13884721 tttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 29714872 - 29714758
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| | | || |||| || | ||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||| |  ||    
T  29714872 ggtcccttaacttaattgattgttttaa-tttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagttttagtcatt 29714774  T
Q  342 tctgttagtttctctc 357  Q
    | ||| ||||||||||    
T  29714773 tatgtcagtttctctc 29714758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 11868008 - 11867898
Alignment:
Q  246 ccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctg 345  Q
    |||| |||||||||||| |||||| || | || | ||||||||| ||||||||||||||||| |||||||||| || || |||| ||||| |  ||| ||    
T  11868008 ccttaacttaattgattgtctcaatttggttc-cttaactataatttgtatcaatttggtcctctatgttttgatttgtcactagttttagtcctttatg 11867910  T
Q  346 ttagtttctctc 357  Q
    ||||||||||||    
T  11867909 ttagtttctctc 11867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 14996614 - 14996664
Alignment:
Q  298 aatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  14996614 aatttggtcccctatgttttgcttcgttactagttttagtcttttctgtta 14996664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 15862628 - 15862540
Alignment:
Q  269 aatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||||||| | ||||||||| |||||| |||||||||| ||||| |||||| |||||||  |||||||  ||||  ||||||||||||    
T  15862628 aatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 2554004 - 2554055
Alignment:
Q  297 caatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    ||||||||||||||||||||| ||||||||||| ||||| |  |||||||||    
T  2554004 caatttggtcccctatgttttacttcgttactagttttagtcctttctgtta 2554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 42126532 - 42126587
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtt 347  Q
    ||||||||||||||||||||||||||||| ||||  || ||||| | |||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagtcttttctgtt 42126587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 14996748 - 14996678
Alignment:
Q  285 tataaattgtatcaatttggtcccc-tatgttttgcttcgttactaattttaattttttctgttagtttct 354  Q
    ||||| ||||| ||||||| ||||| |||||||||||| ||||||| ||||| |  |||||||||||||||    
T  14996748 tataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 34616143 - 34616206
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtccc 308  Q
    |||||| ||||| || |||||||||  ||||||||| |||||||||| ||| |||||||||||||    
T  34616143 tcccttaacttattttattttctcag-tttgatctcttaactataaagtgtctcaatttggtccc 34616206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 6474299 - 6474412
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatg-ttttgcttcgttactaattttaatttttt 342  Q
    |||||| |||||||||||| |||||| ||||||| | ||||||||| || |||||||||||||||||||| |||||||| ||||||| ||||| | ||||    
T  6474299 tcccttaacttaattgattgtctcaa-tttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgttactagttttagtctttt 6474397  T
Q  343 ctgttagtttctctc 357  Q
    |||||||||||||||    
T  6474398 ctgttagtttctctc 6474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 41985928 - 41986041
Alignment:
Q  243 gtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttttt 342  Q
    ||||||| |||||||||||| |||||| ||||||| | ||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |  |||    
T  41985928 gtcccttaacttaattgattgtctcaa-tttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttactaattttagtccttt 41986026  T
Q  343 ctgttagtttctctc 357  Q
    | |||||||||||||    
T  41986027 ccgttagtttctctc 41986041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 28715657 - 28715772
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||| ||| | | || |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |      
T  28715657 ccggtcccttaacttaattaattgttttaa-tttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcc 28715755  T
Q  340 tttctgttagtttctct 356  Q
    |||||| ||||||||||    
T  28715756 tttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 30862512 - 30862436
Alignment:
Q  281 taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||||||| |||||||||||||||||| |||||||||||  ||||||||||||| | |||||||||||||||||||    
T  30862512 taactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 30862234 - 30862340
Alignment:
Q  241 cggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttt 340  Q
    ||||||||| |||||||||||| ||| || |||| || | ||||||||| ||||| |||||||||||||||| |||||||| ||||||| ||||| | |     
T  30862234 cggtcccttaacttaattgattgtctgaa-tttggtcccctaactataatttgtaccaatttggtcccctatattttgctttgttactagttttagtcta 30862332  T
Q  341 ttctgtta 348  Q
    ||||||||    
T  30862333 ttctgtta 30862340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 28715974 - 28715858
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| ||| || |||| || | ||||||||| ||||| ||||||||||| ||| ||||||||  || |||| ||||| |      
T  28715974 ccggtcccttaacttaattgattgtcttaa-tttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcagtcactagttttagtca 28715876  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  28715875 tttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| |||||| |||| || | ||| ||||| ||||| |||||| ||| | ||||||||| |  ||||||| |||||||  ||    
T  47373792 ggtcccttaacttaattgattgtctcaa-tttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctt 47373694  T
Q  342 tctgttagtttctct 356  Q
    | |||||||||||||    
T  47373693 tatgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 47373523 - 47373595
Alignment:
Q  285 tataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||| ||||| ||||||||||||||||||||||||  ||| ||| ||||| |  ||| ||||||||||||||    
T  47373523 tataatttgtaccaatttggtcccctatgttttgctctgttgctagttttagtcatttatgttagtttctctc 47373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 41986108 - 41986065
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaatttta 335  Q
    |||| |||||||||||||||||||||||| |||| |||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaatttta 41986065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 357
Target Start/End: Complemental strand, 6474608 - 6474497
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttc 343  Q
    |||||| |||||||||||| ||| || |||| |||| ||||||||| ||||| | ||||| |||| |||| ||||||  ||||||| ||||| |  |||     
T  6474608 tcccttaacttaattgattgtcttaa-tttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctgttactagttttagtccttta 6474511  T
Q  344 tgttagtttctctc 357  Q
    ||||||||||||||    
T  6474510 tgttagtttctctc 6474497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 33341338 - 33341374
Alignment:
Q  271 tttgatctcataactataaattgtatcaatttggtcc 307  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  33341338 tttggtctcataactataaattgtctcaatttggtcc 33341374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 55173585 - 55173469
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||||| ||||||||||||||||| ||||||| ||||||  ||||| | |    
T  55173585 ccggtcccttaacttaattgattgtctcaa-tttgatctcctaactataatttgtaccaatttggtcccctatgctttgctttgttacttgttttagtct 55173487  T
Q  340 tttctgttagtttctctc 357  Q
    ||| || |||||||||||    
T  55173486 tttttgctagtttctctc 55173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 50509456 - 50509357
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttc 343  Q
    |||||| |||||||||||| ||| || |||| || | ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| | |||||    
T  50509456 tcccttaacttaattgattgtcttaa-tttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttactaattttagtcttttc 50509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 39161343 - 39161419
Alignment:
Q  281 taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |  ||||||  ||||||||||    
T  39161343 taactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctgaaagtttctctc 39161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 37996120 - 37996195
Alignment:
Q  281 taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctct 356  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| || ||||| | |||| | |||||||||||    
T  37996120 taactataatttgtatcaatttggtcccctatgttttgctttgttattagttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 39161621 - 39161503
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    ||||||| |||| |||||||||||| | | || |||| || | ||||||||| ||||| |||||| |||| |||||||||||| ||||| || ||||| |    
T  39161621 atccggttccttaacttaattgattgttttaa-tttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttattagttttagt 39161523  T
Q  338 tttttctgttagtttctctc 357  Q
      ||||||||||||||||||    
T  39161522 cctttctgttagtttctctc 39161503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 55173347 - 55173457
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggt-cccctatgttttgcttcgttactaattttaa 336  Q
    ||||||| |||| |||||||||||| ||| || |||| || | ||||||||| |||||| |||||||| ||||||| ||||||| |||||||| |||||     
T  55173347 atccggttccttaacttaattgattgtcttaa-tttggtcccctaactataatttgtattaatttggtccccctatattttgctccgttactagttttag 55173445  T
Q  337 ttttttctgtta 348  Q
    |  |||||||||    
T  55173446 tcctttctgtta 55173457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 50509278 - 50509327
Alignment:
Q  305 tcccctatgttttgcttcgttactaattttaattttttctgttagtttct 354  Q
    |||||||| |||||||| |||| |||||||| | ||||||||||||||||    
T  50509278 tcccctatattttgctttgttattaattttagtcttttctgttagtttct 50509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 47096819 - 47096900
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttact 328  Q
    |||||| |||||||||||| |||||| |||| || | |||| |||| ||||| |||||||  |||||||||||||||||||||||    
T  47096819 tcccttaacttaattgattatctcaa-tttggtcccctaac-ataatttgtaccaatttgc-cccctatgttttgcttcgttact 47096900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 51663584 - 51663466
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| |||||| |||| || | ||||||||| ||||| ||||||||||| ||||||||||||  ||||||| ||||| |    
T  51663584 atccggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttactagttttagt 51663486  T
Q  338 tttttctgttagtttctctc 357  Q
      ||||||||||||||||||    
T  51663485 catttctgttagtttctctc 51663466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 40244638 - 40244756
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggt-cccctatgttttgcttcgttactaattttaa 336  Q
    ||||| |||||| |||||||||||| |||||| |||| || | ||||||||| ||||| ||||||||| |||||||||||||||| ||||||| |||||     
T  40244638 atccgatcccttaacttaattgattgtctcaa-tttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgttactagttttag 40244736  T
Q  337 ttttttctgttagtttctct 356  Q
    |  |||||||||||||||||    
T  40244737 tcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 20537943 - 20538056
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| ||||||||||| || |||| ||||||| | ||||||||| ||||  |||||||||||||||||||||||||| |||||| ||||| |  ||    
T  20537943 ggtcccttaacttaattgatattatcaa-tttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctt 20538041  T
Q  342 tctgttagtttctct 356  Q
    ||| |||||||||||    
T  20538042 tctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 51663305 - 51663381
Alignment:
Q  281 taactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgttagtttctctc 357  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |  |||||| |||||||||||    
T  51663305 taactataatttgtatcaatttagtcccctatgttttgcttcgttactagttttagtcatttctggtagtttctctc 51663381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 20538266 - 20538150
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    ||||||| || | |||||||||| |||||| ||||||| | ||||||||| |||||||||||| ||   |||||||||||| |||||||| ||||| |      
T  20538266 ccggtcctttaatttaattgattgtctcaa-tttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttactagttttagtca 20538168  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  20538167 tttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 46003578 - 46003465
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| |||||| |||| || | |||||| || ||||| ||||||| |||||| ||||||||||| |||||| ||||| |  ||    
T  46003578 ggtcccttaacttaattgattgtctcaa-tttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtcctt 46003480  T
Q  342 tctgttagtttctct 356  Q
    |||| ||||||||||    
T  46003479 tctggtagtttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 40364060 - 40364172
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttc 343  Q
    |||||| |||||||||||| ||| || |||| || ||||| ||||| ||||||||||||| |||||| | ||||||| ||||| || ||||| |  |||     
T  40364060 tcccttaacttaattgattatcttaa-tttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttattagttttagtcatttt 40364158  T
Q  344 tgttagtttctctc 357  Q
    ||||||||||||||    
T  40364159 tgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 40364287 - 40364183
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||||||||||| | |||| |||| |||| ||||||||| ||||| ||||||| |||| ||||||||| | |||||||| ||||| |  ||    
T  40364287 ggtcccttaacttaattgattgtttcaa-tttggtctcctaactataatttgtaccaatttgatccc-tatgttttgttccgttactagttttagtgatt 40364190  T
Q  342 tctgtta 348  Q
    |||||||    
T  40364189 tctgtta 40364183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 46003446 - 46003390
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||| |  |||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctgtta 46003390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 46003263 - 46003379
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    ||||||| || |||||||||||| | | || |||| || | ||||||||| ||||||||||||||||| ||||||| || |  ||||| | ||||| |      
T  46003263 ccggtcctttaacttaattgattgttttaa-tttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttacaagttttagtcc 46003361  T
Q  340 tttctgttagtttctctc 357  Q
    ||| ||||||||||||||    
T  46003362 tttttgttagtttctctc 46003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 11643764 - 11643879
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| | |||||||||| |||||| ||||||| | ||||||||| ||||||||||||||| |||||||||||| || ||||||| ||||| |      
T  11643764 ccggtcccttaatttaattgattgtctcaa-tttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactagttttagtcc 11643862  T
Q  340 tttctgttagtttctct 356  Q
    | |||||||||||||||    
T  11643863 tctctgttagtttctct 11643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 24798950 - 24798860
Alignment:
Q  244 tcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaatttta 335  Q
    |||||| | |||||||||| ||| || ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  24798950 tcccttaaattaattgattgtcttaa-tttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagtttta 24798860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 2216912 - 2216799
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| |||||| |||| || | ||||||||| ||||| ||||||||||||||||||||||||| |||| || ||||| |    
T  2216912 atccggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagt 2216814  T
Q  338 tttttctgttagttt 352  Q
      ||| |||||||||    
T  2216813 catttatgttagttt 2216799  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 18495061 - 18494949
Alignment:
Q  243 gtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttttt 342  Q
    ||||||| |||||||||||| | | || ||||||| | ||||||||| |||||||||||||||||||||| ||||| | ||||| || ||||| || |||    
T  18495061 gtcccttaacttaattgattatattaa-tttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttattagttttagttcttt 18494963  T
Q  343 ctgttagtttctct 356  Q
    ||||||||||||||    
T  18494962 ctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 24798641 - 24798756
Alignment:
Q  241 cggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaatttt 340  Q
    ||||||||| ||||||||| || | |||| |||| || | | ||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |  |    
T  24798641 cggtcccttaacttaattggttgtttcaa-tttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcat 24798739  T
Q  341 ttctgttagtttctctc 357  Q
    |||||||||||||||||    
T  24798740 ttctgttagtttctctc 24798756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 11644080 - 11643973
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| |||||| || |  | | ||||||||| ||||||||||||||| ||||||||||| ||| ||||||| ||||| | |    
T  11644080 ccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctttgttactagttttagtct 11643983  T
Q  340 tttctgttag 349  Q
    ||||||||||    
T  11643982 tttctgttag 11643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 11643898 - 11643954
Alignment:
Q  292 tgtatcaatttggtcccctatgttttgcttcgttactaattttaattttttctgtta 348  Q
    |||| |||||||||||||||||||||||| |||||||| ||||| |  |||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctgtta 11643954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 24690370 - 24690449
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgct 320  Q
    |||||| ||| |||||||||||| |||||| |||| || | | ||||||| ||||| ||||||||||| ||||||||||||    
T  24690370 ccggtctcttaacttaattgattgtctcaa-tttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 24798822 - 24798778
Alignment:
Q  291 ttgtatcaatttggtcccctatgttttgcttcgttactaatttta 335  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagtttta 24798778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 18494751 - 18494862
Alignment:
Q  242 ggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattttt 341  Q
    |||||||| |||| ||||||| |||||| |||| || | || |||||| ||||| || |||||||||||||| ||||||| ||||||| ||||| |  ||    
T  18494751 ggtcccttaactttattgattgtctcaa-tttggtccc-tagctataatttgtaccattttggtcccctatg-tttgctttgttactagttttagtcctt 18494847  T
Q  342 tctgttagtttctct 356  Q
    | |||||||||||||    
T  18494848 tttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 5369 - 5256
Alignment:
Q  238 atccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaat 337  Q
    |||||||||||| |||||||||||| |||||| |||| || | ||||||||| ||||| ||||||||||||||||||||||||| |||| || ||||| |    
T  5369 atccggtcccttaacttaattgattgtctcaa-tttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagt 5271  T
Q  338 tttttctgttagttt 352  Q
      ||| |||||||||    
T  5270 catttatgttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 23037 - 22921
Alignment:
Q  240 ccggtcccttgacttaattgattttctcaaatttgatctcataactataaattgtatcaatttggtcccctatgttttgcttcgttactaattttaattt 339  Q
    |||||||||| |||||||||||| ||| || |||| || | ||||||||| ||||| ||||||| ||| |||||||||||| |||||||| ||||| |      
T  23037 ccggtcccttaacttaattgattgtcttaa-tttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttactagttttagtcc 22939  T
Q  340 tttctgttagtttctctc 357  Q
    ||||||||||||||||||    
T  22938 tttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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