View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3919_low_11 (Length: 335)

Name: NF3919_low_11
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3919_low_11
NF3919_low_11
[»] chr6 (10 HSPs)
chr6 (19-297)||(27878624-27878902)
chr6 (24-212)||(1234830-1235018)
chr6 (19-212)||(26976131-26976324)
chr6 (19-212)||(27873990-27874183)
chr6 (26-212)||(18968007-18968194)
chr6 (19-213)||(30986632-30986830)
chr6 (161-297)||(30967674-30967810)
chr6 (19-166)||(30966776-30966923)
chr6 (24-207)||(21966680-21966860)
chr6 (44-297)||(23012415-23012667)
[»] chr3 (9 HSPs)
chr3 (19-297)||(5823190-5823468)
chr3 (24-297)||(2817178-2817450)
chr3 (19-212)||(5818513-5818706)
chr3 (19-212)||(54546008-54546200)
chr3 (59-212)||(24659136-24659287)
chr3 (98-204)||(4579254-4579360)
chr3 (42-198)||(31204781-31204936)
chr3 (168-224)||(25877086-25877142)
chr3 (26-174)||(35977112-35977258)
[»] chr8 (3 HSPs)
chr8 (24-297)||(9444007-9444280)
chr8 (24-212)||(9439372-9439560)
chr8 (139-195)||(4799315-4799371)
[»] chr5 (6 HSPs)
chr5 (24-297)||(41718539-41718812)
chr5 (24-212)||(41723265-41723453)
chr5 (19-212)||(34360080-34360273)
chr5 (19-212)||(29585300-29585493)
chr5 (19-193)||(34352372-34352546)
chr5 (168-236)||(23319392-23319458)
[»] chr4 (16 HSPs)
chr4 (24-297)||(48701736-48702009)
chr4 (19-297)||(42266027-42266305)
chr4 (19-297)||(30950098-30950375)
chr4 (19-206)||(24520031-24520218)
chr4 (19-214)||(42270746-42270941)
chr4 (24-212)||(48697131-48697320)
chr4 (19-213)||(30945476-30945669)
chr4 (26-212)||(10427410-10427597)
chr4 (28-199)||(48782872-48783031)
chr4 (61-159)||(17248015-17248112)
chr4 (133-201)||(30165900-30165968)
chr4 (171-225)||(21515462-21515516)
chr4 (133-210)||(36615361-36615438)
chr4 (42-88)||(1979329-1979375)
chr4 (108-146)||(1979567-1979604)
chr4 (192-233)||(1999189-1999230)
[»] chr2 (11 HSPs)
chr2 (49-297)||(825632-825881)
chr2 (24-203)||(5198664-5198843)
chr2 (38-290)||(15603020-15603272)
chr2 (49-212)||(830288-830452)
chr2 (19-205)||(28715886-28716070)
chr2 (26-203)||(30396920-30397096)
chr2 (52-212)||(31592910-31593068)
chr2 (47-290)||(13843719-13843959)
chr2 (77-192)||(12175768-12175881)
chr2 (19-212)||(13840240-13840427)
chr2 (42-151)||(42117769-42117876)
[»] chr7 (7 HSPs)
chr7 (26-207)||(16183636-16183818)
chr7 (26-236)||(8139940-8140149)
chr7 (26-292)||(8138384-8138645)
chr7 (41-212)||(30235168-30235339)
chr7 (209-297)||(25441073-25441161)
chr7 (54-199)||(5102606-5102749)
chr7 (97-212)||(36528415-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (26-212)||(27226-27413)
[»] chr1 (4 HSPs)
chr1 (26-212)||(46191361-46191546)
chr1 (26-212)||(4130215-4130401)
chr1 (26-207)||(30697120-30697300)
chr1 (108-212)||(364683-364786)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 27878902 - 27878624
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878902 aattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 27878803  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  27878802 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggta 27878703  T
Q  219 tcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878702 tcagagcccctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 27878624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 1234830 - 1235018
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234830 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 1234929  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  1234930 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 1235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 26976324 - 26976131
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26976324 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccttggttttttccccttatttgttga 26976225  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26976224 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 26976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 27874183 - 27873990
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27874183 aattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttga 27874084  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||    
T  27874083 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattttgttactctggtacctaaca 27873990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 18968007 - 18968194
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18968007 ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtt 18968106  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  18968107 tccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 18968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 30986632 - 30986830
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtgg--ttttttccccttatttgtt 116  Q
    |||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||    
T  30986632 aattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgtt 30986731  T
Q  117 gagggg---tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacag 213  Q
    ||||||   ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||||||    
T  30986732 gaggggtactttccacgt-aaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaacag 30986830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
Q  161 tcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac 260  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30967674 tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac 30967773  T
Q  261 tagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30967774 tagtggtgtggtaagaaaaatcttagtatgctctgtg 30967810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 30966776 - 30966923
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttg 117  Q
    |||| ||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  30966776 aattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttg 30966875  T
Q  118 aggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 166  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30966876 atgggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 21966680 - 21966860
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| |||||||||    
T  21966680 tactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgaggggt 21966778  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacc 207  Q
    |||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||| || |||||||| ||| |||||| |||||||    
T  21966779 ttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc 21966860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 23012667 - 23012415
Alignment:
Q  44 agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt 143  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||  |||||||| ||| | |||||| || | ||||||||||||| || |||||    
T  23012667 agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt 23012571  T
Q  144 gttcagttcctctttt-ctcgtctcttattttagttgtgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctg 241  Q
    ||||| ||| |||||| |||||||||||||||||||| ||||||||| |||| ||||| || |||| |||| ||  ||  ||||| |||| |||||| ||    
T  23012570 gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg 23012471  T
Q  242 ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    || |||| |    | |||| |||| |||||||||||||| ||||||||||| ||||    
T  23012470 ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 5823468 - 5823190
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823468 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 5823369  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  5823368 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggta 5823269  T
Q  219 tcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823268 tcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 5823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 2817450 - 2817178
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  2817450 tactctccttgtatttagagagagttcttgtaatttcttccacttagtgagagttctttactcttgccctgtggttttttccc-ttatttgttgaggggt 2817352  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcaga 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |    
T  2817351 ttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaaa 2817252  T
Q  224 gcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||  |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||    
T  2817251 gccgctggttcgtagttgttattccgcagtaataaactagtggtgtggtaagaaaaatcttagtatgctatgtg 2817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 5818706 - 5818513
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5818706 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttattagttga 5818607  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5818606 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca 5818513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 54546008 - 54546200
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54546008 aattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttccccttatttgttga 54546107  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||    
T  54546108 ggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacctaaca 54546200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
Q  59 tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt 158  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24659287 tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt 24659190  T
Q  159 tctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  24659189 tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca 24659136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
Q  98 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgtta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta 4579353  T
Q  198 ctctggt 204  Q
    |||||||    
T  4579354 ctctggt 4579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 31204936 - 31204781
Alignment:
Q  42 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattg 140  Q
    ||||||||  |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  31204936 agagaggttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtttccacgt-aaatattg 31204838  T
Q  141 tgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttac 198  Q
    || |||||||||||||||| || |||||| |||||  || ||| ||||||||||||||    
T  31204837 tgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac 31204781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
Q  168 ttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagag 224  Q
    |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||    
T  25877086 ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag 25877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 35977112 - 35977258
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||| ||| |||||||| |||||||||||||||  || | ||||||||||  |||  ||||||||  ||| |||||| || ||    
T  35977112 ctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgttgatggttt 35977209  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt 174  Q
    |  |||| ||||||||| |||||| || ||||||||||  ||||||||||    
T  35977210 tttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt 35977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 9444280 - 9444007
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444280 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 9444181  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcaga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  9444180 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaga 9444081  T
Q  224 gcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444080 gccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 9444007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 9439560 - 9439372
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439560 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 9439461  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9439460 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 9439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
Q  139 tgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgt 195  Q
    |||||||||| || |||||||||| |||||||||||||  |||||||||||||||||    
T  4799315 tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt 4799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 41718539 - 41718812
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718539 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 41718638  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcaga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  41718639 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaga 41718738  T
Q  224 gcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718739 gccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 41718812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 41723265 - 41723453
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723265 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 41723364  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  41723365 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 41723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 34360080 - 34360273
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360080 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 34360179  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  34360180 ggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 34360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 29585493 - 29585300
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585493 aattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 29585394  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  29585393 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctgatacctaaca 29585300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 34352372 - 34352546
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352372 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 34352471  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatatttt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  34352472 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt 34352546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 23319458 - 23319392
Alignment:
Q  168 ttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgt 236  Q
    ||||||||||||||| ||||||||  |||| | || ||||||||||||||||||||||  |||||||||    
T  23319458 ttattttagttgtgtaataatatt--gttattatgatacctaacagtggtatcagagcttttggttcgt 23319392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 48702009 - 48701736
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702009 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 48701910  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcaga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  48701909 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaga 48701810  T
Q  224 gcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701809 gccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 48701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 42266027 - 42266305
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266027 aattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 42266126  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  42266127 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaacagtggta 42266226  T
Q  219 tcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266227 tcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 42266305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 30950375 - 30950098
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30950375 aattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccc-ttatttgttga 30950277  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30950276 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaacagtggta 30950177  T
Q  219 tcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950176 tcagagctcctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 30950098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 24520218 - 24520031
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520218 aattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 24520119  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24520118 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtac 24520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 42270746 - 42270941
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270746 aattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 42270845  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||    
T  42270846 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaacagt 42270941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 48697320 - 48697131
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgagggg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48697320 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagggg 48697221  T
Q  123 tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||    
T  48697220 tttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtacctaaca 48697131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 30945669 - 30945476
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30945669 aattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgattttttccc-ttatttgttga 30945571  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  30945570 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaacag 30945476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 10427410 - 10427597
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||    
T  10427410 ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgaggggtt 10427509  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  10427510 tccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca 10427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 48782872 - 48783031
Alignment:
Q  28 ctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc 127  Q
    |||| |||| ||||||||||||| | ||||||||||||||||||||||||||||         ||| ||  |||||||| ||||||||||||   |||||    
T  48782872 ctccatgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg--tttttccctttatttgttgagaaatttcc 48782960  T
Q  128 acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttact 199  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||| | | |||||||||||||| ||||    
T  48782961 acgtaaa-tattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact 48783031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
Q  61 ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt 159  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| |||||||    
T  17248015 ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt 17248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
Q  133 aaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactct 201  Q
    ||||||| |||||||| ||| | ||||||| | ||||||||||||||||||||| ||||||||||||||    
T  30165900 aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct 30165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 21515516 - 21515462
Alignment:
Q  171 ttttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagc 225  Q
    |||||||||||||| |||| |||||||||||| |||| |||| ||||||||||||    
T  21515516 ttttagttgtgtgaaaatactttgttactctgatacccaacaatggtatcagagc 21515462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
Q  133 aaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaa 210  Q
    ||||| ||| ||||| ||| |||||||||| | ||||||||||  |||| ||||||||||| ||||||| ||||||||    
T  36615438 aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa 36615361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 1979329 - 1979375
Alignment:
Q  42 agagaggtcctgtaatttcttccacttagtgaaagttctctactctt 88  Q
    ||||||||| ||||||||||||| |||| |||||||| |||||||||    
T  1979329 agagaggtcgtgtaatttcttcctcttactgaaagttatctactctt 1979375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
Q  108 ttatttgttgaggggtttccacgtaaaatattgtgtgtt 146  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1979567 ttatttgttgaggggtttccacgt-aaatattgtgtgtt 1979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
Q  192 ttgttactctggtacctaacagtggtatcagagcccttggtt 233  Q
    |||||| |||| |||||||||||||||||||||| |||||||    
T  1999189 ttgttattctgatacctaacagtggtatcagagcacttggtt 1999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 825632 - 825881
Alignment:
Q  49 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  825632 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc 825731  T
Q  148 agttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc 247  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  825732 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc 825831  T
Q  248 cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  825832 cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg 825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 5198843 - 5198664
Alignment:
Q  24 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198843 tactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggt 5198744  T
Q  124 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5198743 ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 5198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 15603020 - 15603272
Alignment:
Q  38 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 137  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603020 ttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 15603119  T
Q  138 ttgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 237  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||   ||| ||||||| |||||||| | ||||||||||    
T  15603120 ttgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcagagtcattggttcgta 15603219  T
Q  238 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 290  Q
      |||||||||| ||  | ||||| |||||||||||||||| |||||||||||    
T  15603220 attgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg 15603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 830288 - 830452
Alignment:
Q  49 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 147  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  830288 tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 830387  T
Q  148 agttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  830388 agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca 830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 28715886 - 28716070
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| ||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||| ||||  |  ||||||||| ||||||||||  |||    
T  28715886 aattgtactctccttgcatttagagagatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtggttttt-ccccttatttaatga 28715984  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggta 205  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  28715985 ggggtttccacgtaaa-tattgtgtgttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta 28716070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 30397096 - 30396920
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    |||||||||||  |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| ||||||||||||||||||||    
T  30397096 ctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtt 30396997  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctgg 203  Q
    || ||| ||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  30396996 tcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg 30396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
Q  52 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 151  Q
    ||||||||||| |  ||||||||||||||||||||||  |  ||||||||||  | |||||| ||||| | |||||||||||| |||||| ||||  |||    
T  31593068 tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt 31592971  T
Q  152 cctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||| ||  |||||||||||||| ||||||| || |||| ||||    
T  31592970 cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca 31592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 290
Target Start/End: Complemental strand, 13843959 - 13843719
Alignment:
Q  47 ggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgtt 146  Q
    ||||||||||||||||||||||| ||||| |||| |||| ||  ||  |  ||||| | ||||||||||||||||||||||||||||| ||||||||  |    
T  13843959 ggtcctgtaatttcttccacttaatgaaaattctatacttttaacctataattttt-ctccttatttgttgaggggtttccacgtaaa-tattgtgt--t 13843864  T
Q  147 cagttc-ctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttat 245  Q
    || ||  || |||||||    |||| |||| ||  ||||||||||||| |||||||| || | |  |||||||| |||||| |||| ||||    ||| |    
T  13843863 catttttcttttttctcaaaacttactttacttacgtgataatattttattactctgatagccacaagtggtattagagccattggctcgtgatagttgt 13843764  T
Q  246 tccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 290  Q
    ||||||||   ||||| ||||||||||||||||||| ||||||||    
T  13843763 tccgctgtagcaaactggtggagtggtaagaaaaatattagtatg 13843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
Q  77 ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag 176  Q
    ||||||||||||| ||  | |||||||||  |||||| |||||  ||||||||  ||||||||||||||||| || || |||| || ||| |||||||||    
T  12175881 ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag 12175784  T
Q  177 ttgtgtgataatattt 192  Q
    ||| ||||||||||||    
T  12175783 ttgcgtgataatattt 12175768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 13840427 - 13840240
Alignment:
Q  19 aattatactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttga 118  Q
    |||| |||||||||| || ||||||||||||  |||||||| ||  |||| || ||| || ||||||||||| || ||  |||| |||||| ||||||||    
T  13840427 aattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttgctccatg--ttttcccccttgtttgttga 13840331  T
Q  119 ggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||  ||  || || ||||||  ||||||| ||||||| |||||| ||| ||||| || ||  ||||||||||||||||| ||||||||| ||||    
T  13840330 ggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataatattttgttattctggtacccaaca 13840240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
Q  42 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 141  Q
    ||||||||| | ||||||||  |  ||| |||||||| |||||| ||| | ||||||||| ||||||||||  ||||| |||||| |||| |||||||||    
T  42117769 agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgt 42117866  T
Q  142 gtgttcagtt 151  Q
     |||||||||    
T  42117867 atgttcagtt 42117876  T

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Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 16183818 - 16183636
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183818 ctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 16183719  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  16183718 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 16183636  T

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Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 8140149 - 8139940
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 125  Q
    ||||||||||| | ||||||||||| | |||||||||||||| |||||||||| |||| |||| |||| ||||||| |||||||||||||||||||||||    
T  8140149 ctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatcttaccccatggttttctccccttatttgttgaggggttt 8140050  T
Q  126 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagc 225  Q
    |||| |||| ||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  8140049 ccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataatattttgttactctggtacccaacagtggtattagagc 8139951  T
Q  226 ccttggttcgt 236  Q
    | |||||||||    
T  8139950 cattggttcgt 8139940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 26 - 292
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 125  Q
    ||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| ||||||||    
T  8138645 ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt 8138546  T
Q  126 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaacagtggtatcagagc 225  Q
    |||| | || || |||||||| ||||  ||||||||||||||||||||||| || ||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  8138545 ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc 8138447  T
Q  226 ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct 292  Q
    | ||||||||| |  ||||||| || |     |||| || |||||||||||||||||||||||||||    
T  8138446 cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct 8138384  T

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Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 30235168 - 30235339
Alignment:
Q  41 gagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatatt 139  Q
    ||||||||||||||||||||||| | ||| |||||||| |||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  30235168 gagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttccccttattcgttgaggggtttccacgtaaa-tatt 30235266  T
Q  140 gtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||||||||||| | | ||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  30235267 gtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacccaaca 30235339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 25441073 - 25441161
Alignment:
Q  209 aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 297  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25441073 aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 25441161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
Q  54 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 153  Q
    |||||||| ||||||||| |||||| ||||||||||| || |||||||| |||||||||||||||||| |||| | ||||| |||| ||| || ||| ||    
T  5102749 taatttctcccacttagtaaaagttatctactcttgctccatggttttt-ccccttatttgttgagggttttc-atgtaaa-tattatgtatttagtccc 5102653  T
Q  154 tctttt-ctcgtctcttattttagttgtgtgataatattttgttact 199  Q
    |||||| ||| ||| |||||||||||| |||||||||||||||||||    
T  5102652 tctttttctcatcttttattttagttgagtgataatattttgttact 5102606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
Q  97 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgtt 196  Q
    |||||||  ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||| || ||  || ||||||    
T  36528529 gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt 36528431  T
Q  197 actctggtacctaaca 212  Q
    |||||| |||| ||||    
T  36528430 actctgatacccaaca 36528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 27413 - 27226
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27413 ctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 27314  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  27313 tccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 46191361 - 46191546
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    |||||||| || ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46191361 ctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgaggggtt 46191460  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||    
T  46191461 tccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaaca 46191546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 124  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  4130215 ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt 4130314  T
Q  125 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacctaaca 212  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||    
T  4130315 tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca 4130401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
Q  26 ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 125  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt 30697201  T
Q  126 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacc 207  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||    
T  30697200 ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc 30697120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 364683 - 364786
Alignment:
Q  108 ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgtgtgataatattttgttactctggtacc 207  Q
    ||||| ||| ||||| ||| ||||||| ||||||||| ||  ||||| ||||||| ||| |||||||| |||| ||||| |||||| ||||||| |||||    
T  364683 ttattggttaaggggattcaacgtaaa-tattgtgtggtcgattccttttttctcatctattattttaattgtatgatattattttattactctcgtacc 364781  T
Q  208 taaca 212  Q
     ||||    
T  364782 aaaca 364786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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