View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3919_low_12 (Length: 322)
Name: NF3919_low_12
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 5337681 - 5337376
Alignment:
| Q |
1 |
gatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagnnnnnnn-gttacagtaaataag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5337681 |
gatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagttacagtaaataag |
5337582 |
T |
|
| Q |
100 |
ctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaatctgattttg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337581 |
ctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaatctgattttg |
5337482 |
T |
|
| Q |
200 |
aacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacgagtttggtgt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337481 |
aacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacgagtttggtgt |
5337382 |
T |
|
| Q |
300 |
attatt |
305 |
Q |
| |
|
|||||| |
|
|
| T |
5337381 |
attatt |
5337376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University