View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_low_16 (Length: 254)
Name: NF3919_low_16
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_16 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 7425803 - 7425576
Alignment:
| Q |
17 |
aataaccaccttagctcctatactcacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagacc |
116 |
Q |
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| T |
7425803 |
aataaccaccttagctcctatactcacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacattccctcttcagcagacc |
7425704 |
T |
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| Q |
117 |
gacagaaacaccacagtcagcaacaacaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggat |
216 |
Q |
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| T |
7425703 |
gacagaaacaccacagtcagcaacaacaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggat |
7425604 |
T |
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| Q |
217 |
atttcagacacagcgtaaataatctgtg |
244 |
Q |
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| T |
7425603 |
atttcagacacagcataaataatctgtg |
7425576 |
T |
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Target: scaffold0066 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 17953 - 18139
Alignment:
| Q |
42 |
acagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaaca |
141 |
Q |
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|||||| || |||||||||||||||||||| ||||||| | |||| || ||||| |||||||| ||| | ||||| |||||||||||| ||||| || |
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| T |
17953 |
acagcatcataagactccctctgcttccaaccaaaagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagccagcagca |
18052 |
T |
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| Q |
142 |
acaagaaaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
228 |
Q |
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| T |
18053 |
gcaagaaagcaccatagacacaccccctcctcagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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