View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_low_17 (Length: 251)
Name: NF3919_low_17
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 40738616 - 40738464
Alignment:
| Q |
79 |
tttgaataatatttatattttaaaaaattaagtaaaatccattttggtgtgtgtgtttaaatggagtgtccgacatcatgtgctcaaacgaaaatacctc |
178 |
Q |
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| T |
40738616 |
tttgaataatatttattttttaaaaaattaagtaaaatccattttgatgtgtgt--ttaaatggagtgtccgacatcatgtgctcaaacgaaaatacctc |
40738519 |
T |
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| Q |
179 |
tcaattgaatcaccacaatattctacttatcataattacaaattagttactctta |
233 |
Q |
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| T |
40738518 |
tcgattgaatcacgacaatattctacttatcataattacaaattagttactctta |
40738464 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 14179271 - 14179340
Alignment:
| Q |
80 |
ttgaataatatttatattttaaaaaattaagtaaaatccattttggtgtgtgtgtttaaatggagtgtcc |
149 |
Q |
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| T |
14179271 |
ttgaataacatttattttttaaagaattaagtaaaatacattttgatgtgtgtgtttaaatagtgtgtcc |
14179340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 20731777 - 20731715
Alignment:
| Q |
80 |
ttgaataatatttatattttaaaaaattaagtaaaatccattttg--gtgtgtgtgtttaaat |
140 |
Q |
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| T |
20731777 |
ttgaataatatttattttttaaagaattaagtaaaatacattttgatgtgtgtgtgtttaaat |
20731715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 35538866 - 35538910
Alignment:
| Q |
80 |
ttgaataatatttatattttaaaaaattaagtaaaatccattttg |
124 |
Q |
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| T |
35538866 |
ttgaataatattgattttttaaagaattaagtaaaatacattttg |
35538910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 32367383 - 32367324
Alignment:
| Q |
80 |
ttgaataatatttatattttaaaaaattaagtaaaatccattttggtgtgtgtgtttaaa |
139 |
Q |
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| T |
32367383 |
ttgaataatatttttatttttttaaattaagtaaaatacattttgatgtgtgtgtttaaa |
32367324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 24727644 - 24727714
Alignment:
| Q |
80 |
ttgaataatatttatattttaaaa-aattaagtaaaatccattttggtgtgtgtgtttaaatggagtgtcc |
149 |
Q |
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| T |
24727644 |
ttgaataatatttttttttttaaagaatcaagtaaaatacattttgatgtgtgtgtttaaatagtgtgtcc |
24727714 |
T |
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