View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_low_18 (Length: 244)
Name: NF3919_low_18
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 44688676 - 44688479
Alignment:
| Q |
19 |
attagatcatgaaaatacaaatttcatgattaagacatatgagagaattaatggatacctcctcccactctatttggatttggtgcataatttaagtcat |
118 |
Q |
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| T |
44688676 |
attagatcatgaaaatacaaatttcatgattaagacatatgagagaattaatggatacctcctcccactctatttggatttggtgcataatttaagtcat |
44688577 |
T |
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| Q |
119 |
gtagttttcaatcccaaccatctaatcttaacttaatggttgatacgactattttaannnnnnnngttagtagttggactcacacgtcttaaaggtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||| |||| |
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| T |
44688576 |
gtagttttcaatcccaaccatctaatcttaacttaatggttggtacgactattttaattttttttgttagtagttggattcacacatcttaaaagtag |
44688479 |
T |
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