View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3919_low_2 (Length: 723)

Name: NF3919_low_2
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3919_low_2
NF3919_low_2
[»] chr6 (22 HSPs)
chr6 (11-707)||(2601786-2602482)
chr6 (596-707)||(2617741-2617852)
chr6 (596-707)||(2583956-2584067)
chr6 (591-707)||(2678965-2679081)
chr6 (596-707)||(2646564-2646675)
chr6 (597-707)||(2431231-2431341)
chr6 (596-701)||(2447306-2447411)
chr6 (596-707)||(2574384-2574495)
chr6 (237-517)||(33234849-33235127)
chr6 (238-500)||(14494435-14494698)
chr6 (270-462)||(6820967-6821159)
chr6 (238-517)||(12843789-12844069)
chr6 (238-501)||(17539919-17540183)
chr6 (304-509)||(19294279-19294482)
chr6 (238-517)||(1255657-1255941)
chr6 (9-80)||(19294667-19294738)
chr6 (43-284)||(17261714-17261962)
chr6 (429-517)||(56894-56982)
chr6 (426-517)||(34011336-34011427)
chr6 (426-501)||(34013439-34013514)
chr6 (239-313)||(57087-57162)
chr6 (411-476)||(6812415-6812480)
[»] chr1 (11 HSPs)
chr1 (42-513)||(16426322-16426802)
chr1 (218-448)||(3387610-3387843)
chr1 (218-424)||(50127135-50127343)
chr1 (238-431)||(3954922-3955116)
chr1 (238-405)||(48632578-48632747)
chr1 (429-513)||(32740740-32740824)
chr1 (421-517)||(50127494-50127590)
chr1 (238-333)||(126323-126419)
chr1 (291-517)||(23431752-23431980)
chr1 (9-85)||(48632329-48632405)
chr1 (240-367)||(9148996-9149123)
[»] chr2 (15 HSPs)
chr2 (40-501)||(17651161-17651628)
chr2 (70-500)||(41848922-41849347)
chr2 (305-517)||(38783673-38783886)
chr2 (297-517)||(32200878-32201099)
chr2 (298-517)||(9929517-9929737)
chr2 (158-325)||(18724652-18724819)
chr2 (238-501)||(34409577-34409843)
chr2 (242-352)||(44649966-44650077)
chr2 (318-478)||(16661253-16661414)
chr2 (426-488)||(18724896-18724959)
chr2 (238-443)||(26576021-26576227)
chr2 (306-486)||(27003952-27004133)
chr2 (9-80)||(26576401-26576472)
chr2 (268-367)||(4748106-4748205)
chr2 (451-500)||(4748269-4748318)
[»] scaffold1723 (1 HSPs)
scaffold1723 (170-462)||(265-557)
[»] scaffold0012 (1 HSPs)
scaffold0012 (218-443)||(209151-209377)
[»] chr8 (20 HSPs)
chr8 (236-517)||(27401709-27401991)
chr8 (218-448)||(18393525-18393758)
chr8 (272-507)||(3159736-3159963)
chr8 (9-442)||(13097405-13097841)
chr8 (272-394)||(2875409-2875532)
chr8 (272-394)||(2796200-2796326)
chr8 (272-367)||(2889764-2889859)
chr8 (272-367)||(3145276-3145371)
chr8 (297-517)||(15850511-15850732)
chr8 (218-517)||(1225942-1226245)
chr8 (328-497)||(28867194-28867364)
chr8 (9-137)||(2874854-2874983)
chr8 (328-497)||(28869758-28869927)
chr8 (238-513)||(28420931-28421207)
chr8 (240-345)||(15131966-15132071)
chr8 (298-478)||(37855085-37855266)
chr8 (426-501)||(18603242-18603317)
chr8 (240-287)||(31772559-31772606)
chr8 (69-137)||(2797251-2797320)
chr8 (238-347)||(44502348-44502457)
[»] chr7 (19 HSPs)
chr7 (218-439)||(27993866-27994093)
chr7 (194-472)||(11820479-11820752)
chr7 (238-462)||(37338759-37338984)
chr7 (238-518)||(27616210-27616492)
chr7 (268-478)||(11809304-11809507)
chr7 (158-335)||(9729790-9729969)
chr7 (396-478)||(9730062-9730144)
chr7 (597-707)||(17875048-17875158)
chr7 (205-404)||(11810876-11811077)
chr7 (219-352)||(48598361-48598495)
chr7 (317-462)||(11816926-11817064)
chr7 (257-364)||(32716528-32716635)
chr7 (426-517)||(43837406-43837497)
chr7 (426-500)||(5741583-5741657)
chr7 (426-499)||(11812686-11812759)
chr7 (9-80)||(44572283-44572354)
chr7 (467-517)||(45216141-45216191)
chr7 (270-359)||(6439784-6439873)
chr7 (32-126)||(11809061-11809156)
[»] chr5 (6 HSPs)
chr5 (238-500)||(32676631-32676893)
chr5 (380-454)||(4111966-4112040)
chr5 (321-517)||(40837692-40837889)
chr5 (411-501)||(41815782-41815871)
chr5 (242-366)||(38989252-38989374)
chr5 (238-332)||(40837975-40838068)
[»] chr3 (7 HSPs)
chr3 (204-309)||(42718559-42718665)
chr3 (238-515)||(43921939-43922217)
chr3 (238-499)||(21408855-21409118)
chr3 (426-517)||(26565197-26565288)
chr3 (238-462)||(11410624-11410850)
chr3 (9-85)||(25092132-25092208)
chr3 (239-347)||(29697008-29697116)
[»] chr4 (8 HSPs)
chr4 (209-334)||(32593896-32594018)
chr4 (377-478)||(32593718-32593819)
chr4 (426-517)||(54305542-54305633)
chr4 (426-513)||(55680627-55680714)
chr4 (297-367)||(40289207-40289277)
chr4 (238-332)||(45612436-45612530)
chr4 (452-517)||(658632-658697)
chr4 (15-80)||(54305958-54306023)
[»] scaffold0325 (1 HSPs)
scaffold0325 (238-493)||(12788-13045)


Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 11 - 707
Target Start/End: Complemental strand, 2602482 - 2601786
Alignment:
Q  11 cacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgccaaaatgagttgttttctact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602482 cacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgccaaaatgagttgttttctact 2602383  T
Q  111 ttattttgacactccttggaccggtgtttgacacctataatacatataggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccac 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602382 ttattttgacactccttggaccggtgtttgacacctataacacatataggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccac 2602283  T
Q  211 acacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602282 acacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtac 2602183  T
Q  311 atggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactctt 410  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2602182 atggataaataaagggtaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgattctt 2602083  T
Q  411 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgt 510  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2602082 aatttagatcttttataaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtgtccgtgtaactgtcgtgt 2601983  T
Q  511 caggtgtatgtacttcatggtattggagagaaagtaacactttaccgactaaattgatggtctattctttgcatatgataaactacagagggttattgtt 610  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2601982 caggtgtctgtacttcatggtattggagagaaagtaacactttaccgactaaattgatggtctgctctttgcatatgataaactacagagggttattgtt 2601883  T
Q  611 ggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgatttgcatgttac 707  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2601882 ggacaagaacagatgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttttaagacaagaagtagcatactttgatttgcatgttac 2601786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 596 - 707
Target Start/End: Original strand, 2617741 - 2617852
Alignment:
Q  596 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2617741 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttga 2617840  T
Q  696 tttgcatgttac 707  Q
    ||||||||||||    
T  2617841 tttgcatgttac 2617852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 596 - 707
Target Start/End: Original strand, 2583956 - 2584067
Alignment:
Q  596 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  2583956 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctaggtacttaaaagcagttctaagacaagaagtagcatactttga 2584055  T
Q  696 tttgcatgttac 707  Q
    ||||||||||||    
T  2584056 tttgcatgttac 2584067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 591 - 707
Target Start/End: Complemental strand, 2679081 - 2678965
Alignment:
Q  591 aactacagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatac 690  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2679081 aacttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctagatacttaaaagcagttctaagacaagaagtagcatac 2678982  T
Q  691 tttgatttgcatgttac 707  Q
    |||||||||||||||||    
T  2678981 tttgatttgcatgttac 2678965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 596 - 707
Target Start/End: Complemental strand, 2646675 - 2646564
Alignment:
Q  596 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2646675 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtatcatactttga 2646576  T
Q  696 tttgcatgttac 707  Q
    ||||||| ||||    
T  2646575 tttgcatattac 2646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 597 - 707
Target Start/End: Original strand, 2431231 - 2431341
Alignment:
Q  597 agagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgat 696  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  2431231 agagggctattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtatcatactttgat 2431330  T
Q  697 ttgcatgttac 707  Q
    |||||||||||    
T  2431331 ttgcatgttac 2431341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 596 - 701
Target Start/End: Original strand, 2447306 - 2447411
Alignment:
Q  596 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 695  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2447306 cagagggttattgttggacaagaacaggtgagagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttga 2447405  T
Q  696 tttgca 701  Q
    ||||||    
T  2447406 tttgca 2447411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 596 - 707
Target Start/End: Complemental strand, 2574495 - 2574384
Alignment:
Q  596 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||    
T  2574495 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcaattctaagacaagatgtagcttactttga 2574396  T
Q  696 tttgcatgttac 707  Q
    ||||||| ||||    
T  2574395 tttgcatattac 2574384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 237 - 517
Target Start/End: Original strand, 33234849 - 33235127
Alignment:
Q  237 gtgagaaatgtt--gatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatact 334  Q
    ||||||||||||  ||||||  |||| ||||| |||||||||||||||||||||  ||| || |||||||||||| |||||||||| |||| ||||||||    
T  33234849 gtgagaaatgttttgatcaagaaggggttatagacattaaagttgattacaaca-ttttgaaattttcgatagtagatggataaat-aaggtcaaatact 33234946  T
Q  335 attgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaa 433  Q
    |||||||||||||||| | |||||| ||||||| |||  |||| |||||||||||  |||| ||||||||||   | ||||||||| |||| ||||||||    
T  33234947 attgtatcttgttataaaacttttt-taatgaaataaattgctcaagttagatgc--atgtatgtattttgatgataaatttagatattttataaataaa 33235043  T
Q  434 ttaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||| |||||||    ||||||||||| ||| |||||||||||||  |||||| |||||  | ||| |||||| ||||||||    
T  33235044 ttaatacataggtaacaatgtcggtgtcctaggctttttacattaacgatgtcgacgtgtctctatcaatgtcgtatcaggtgt 33235127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 238 - 500
Target Start/End: Original strand, 14494435 - 14494698
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||||| ||||| ||||| |||| | ||||||||| | ||  ||||| ||||| |||| || | | ||||||||||| ||||||||||     
T  14494435 tgagaaatgttgatcaattaggggttatagacatcatagttgattatatcatttttaacttttttgataatagacgaataaataaaggtcaaatactatg 14494534  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     ||| ||||| || | |||||||||||||| |||  |||| ||| ||||||  ||| | |||||||| | | | | |||||| | | | |||||||||||    
T  14494535 atattttgttgtagaactttttctaatgaaataaattgctaaagatagatgtttatatatgtattttaattttcattttagaccgtctttaaataaatta 14494634  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 500  Q
    | ||||| |||| |||||||||||||    | |||||||||| | ||||||| |||||||||||    
T  14494635 acatatatgtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgtgtc 14494698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 462
Target Start/End: Complemental strand, 6821159 - 6820967
Alignment:
Q  270 attaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagt 369  Q
    |||||| || |||||||||| |||||| ||||  | |||| |||||||||||||   |||||||||||| |  |||||||| | || ||| ||||||| |    
T  6821159 attaaatttaattacaacacttttaaaattttt-acagtagatggataaataaattccaaatactattgcacattgttatacaactatttttaatgaaat 6821061  T
Q  370 aatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtcc 462  Q
    ||  |||| ||| ||||||||||||| | |||||||| ||| ||||||||| |||| ||| |||||||||||||| |||| | |||||||||||    
T  6821060 aaattgctcaagatagatgcatatgtatatattttgattctaaatttagattttttataagtaaattaatatataagtagcgatgtcggtgtcc 6820967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 238 - 517
Target Start/End: Complemental strand, 12844069 - 12843789
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  ||||| ||||||| ||| ||||||||||| ||||||||||     
T  12844069 tgagaaatgttgatcaattaggggttatacacattatagttgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatactatg 12843970  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     |||||| || || | ||| |||||||||| ||   |||| ||||||||||  ||| | |||||||| | | | | |||||| | | | |||||||||||    
T  12843969 atatcttattgtagaacttgttctaatgaaatatattgctcaagttagatgtttatatatgtattttcattttcattttagaccgtctttaaataaatta 12843870  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    | ||||| ||||  ||||  |||||| |  ||| ||| |||| ||||||||| ||||  |||||| |||||||||| ||||    
T  12843869 acatatatgtagcagtgttagtgtcctatatttgttatattagcagtgtcgacgtgtttgtgtcagtgtcgtgtcaagtgt 12843789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 501
Target Start/End: Complemental strand, 17540183 - 17539919
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||||| ||||| |||||||  ||| ||||||||| | ||  ||||  ||||| ||||||| ||  ||||||||||| ||||||||||     
T  17540183 tgagaaatgttgatcaattaggggttataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaaggtcaaatactatg 17540084  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctg-ctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     |||||| ||  | | ||||||||||||   |||  || | ||||||||||  ||| | |||||||| | | | | |||||| | | | |||||||||||    
T  17540083 atatcttattgcagaactttttctaatgtcataaattgcccaagttagatgtttatatatgtattttaattttcattttagaccgtctttaaataaatta 17539984  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 501  Q
    | ||||| |||  ||||||||||||  |  |||||||||||||| |||||||  |||||||||||    
T  17539983 acatatatgtaatggtgtcggtgtcttatattttttacattaacggtgtcgacatgtccgtgtca 17539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 509
Target Start/End: Complemental strand, 19294482 - 19294279
Alignment:
Q  304 atagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattt 402  Q
    |||||| ||| ||||||||||| ||||||||||  |||||||||  |   |||||||||||||| |||  |||| ||||||||||  ||| | |||||||    
T  19294482 atagtagatgaataaataaaggtcaaatactatgatatcttgttgaa---ctttttctaatgaaataaattgcttaagttagatgtttatatatgtattt 19294386  T
Q  403 tgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcac 502  Q
    | | |   | |||||| | | | |||||||||||| ||||| |||| ||| ||||||||| |  |||||||||||| | |||||||||||| |||||||     
T  19294385 taatttccattttagaccgtctttaaataaattaacatatatgtagcggtatcggtgtcctatattttttacattagcggtgtcgatgtgttcgtgtcag 19294286  T
Q  503 tgtcgtg 509  Q
    |||||||    
T  19294285 tgtcgtg 19294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 238 - 517
Target Start/End: Original strand, 1255657 - 1255941
Alignment:
Q  238 tgagaaatgttgatcaactagggt-ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    |||| |||||||||||| |||||  ||||| |||||| ||||||||| ||||  ||||  ||||| ||||| | ||  ||||||||| | |||||||||     
T  1255657 tgaggaatgttgatcaattagggggttatagacattacagttgattataacatttttagcttttttgatagcagatacataaataaatgtcaaatactac 1255756  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatt 435  Q
      ||||||||| || | ||||||||||| || |||  |||| |||||| |||| ||| | |||||||||| | | | |||||| | | |  |||||||||    
T  1255757 gatatcttgttttagaactttttctaataaaataacttgctcaagttaaatgcttatatatgtattttgattttcattttagaccgtctacaaataaatt 1255856  T
Q  436 aatatata---ggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    || |||||    |||| ||||||||||||| |  ||||||||| |||||||||||| || || |||||| | |||| ||||||||    
T  1255857 aacatatatgtagtagcggtgtcggtgtcccatattttttacactaacagtgtcgaagtatctgtgtcagtatcgtatcaggtgt 1255941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19294738 - 19294667
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| |||||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||    
T  19294738 agcaccgacacctctaggattaggcgtgtcgcggtgtccgacactcctgtgacacccgtacgacacgtgtcg 19294667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 17261962 - 17261714
Alignment:
Q  43 tgtccgacactgctatgacacacatacgacacgtgtcggacaag-tgccaaaatgagttgttttctactttattttgacactccttggaccggtgtttga 141  Q
    ||||| ||||| ||| ||||| | ||||||||||||| |||||| | || |||| || |||||||| |||||||| |||||| ||| |||||||||  ||    
T  17261962 tgtccaacactcctacgacactcgtacgacacgtgtccgacaagattcctaaataaggtgttttcttctttatttcgacacttcttagaccggtgtccga 17261863  T
Q  142 cacct--ataatacatat---aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaa--at 234  Q
    |||||   ||| || |||   | | ||||||| ||| ||||| | || | | || | ||||||| | ||||||||||||  ||||| |||||||||  ||    
T  17261862 cacctgcttaacacttatatgaagtgtgtcggacaattcaaacatatgt-atgaatttttttctctgcttccacacacattagatttaagagttaaagat 17261764  T
Q  235 ctgtgagaaatgttgatcaactagggtttataaacattaaagttgattac 284  Q
     |||||||||||||||||||  |||| ||||  |||||||||||||||||    
T  17261763 gtgtgagaaatgttgatcaatgaggggttatgtacattaaagttgattac 17261714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 517
Target Start/End: Complemental strand, 56982 - 56894
Alignment:
Q  429 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    ||||||||| ||||| |||| |||||  |||||| |  ||||||| |||| | |||||||||||||||| ||| |||||||||||||||    
T  56982 ataaattaacatatatgtagcggtgttcgtgtcctatattttttatattagcggtgtcgatgtgtccgtatcaatgtcgtgtcaggtgt 56894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 34011336 - 34011427
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | | ||||| |||||||||||| ||| |||||| ||||    
T  34011336 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtcacgtgt 34011427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 34013514 - 34013439
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 501  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| ||||||||||||    
T  34013514 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtca 34013439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 57162 - 57087
Alignment:
Q  239 gagaaatgttgatcaactag-ggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatg 313  Q
    |||||||||||||||||||| || ||||| |||||||||||||||| ||||  ||||  ||||| ||||||| |||    
T  57162 gagaaatgttgatcaactagagggttatagacattaaagttgattataacatttttaccttttttgatagtagatg 57087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 6812480 - 6812415
Alignment:
Q  411 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 476  Q
    ||||||||| |||| ||| ||||||||||||||||||| | ||| ||||||| |  ||||||||||    
T  6812480 aatttagattttttataagtaaattaatatataggtagcgatgttggtgtcccattttttttacat 6812415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 42 - 513
Target Start/End: Complemental strand, 16426802 - 16426322
Alignment:
Q  42 gtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgcca-aaatgagttgttttctactttattttgacactccttggaccggtgtttg 140  Q
    |||||||||||| |||||| || | ||||||| |||||| ||||||| || |||| |||| |||| | ||||| |||||||||| |||||||| |||| |    
T  16426802 gtgtccgacactcctatga-actcgtacgacatgtgtcgaacaagtgtcataaataagttttttttttctttactttgacactctttggaccg-tgttcg 16426705  T
Q  141 acacct---ataatacatata---ggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagag-ttaaa 233  Q
    ||||||   |||| || ||||   ||||||| || ||||||||| ||||||  ||||| ||||||||| |||| ||||| |  ||||||||| | |||||    
T  16426704 acaccttatataacacttatatgaggcgtgttggacaactcaaacaaatatacggattttttttctttgcttctacacatagtagattcaaggggttaaa 16426605  T
Q  234 --tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaat 331  Q
      | |||||||||||||||||||| |||  ||||| ||||||||||||||||||   |||||||||||||| ||| || || |||||||||||| |||||    
T  16426604 gatgtgtgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaat 16426505  T
Q  332 actattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaat 430  Q
    |||||||||  |||||||| | ||| || |||||||||||  |||| ||||||||||||||||| |||||||||| |||||||||| ||||||| |||||    
T  16426504 actattgtaatttgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaat 16426405  T
Q  431 aaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 513  Q
    |||||||||||||||||| |||||| |||||| | | ||||||||||||| |||| || |||||||||||| ||| |||||||    
T  16426404 aaattaatatataggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcag 16426322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 218 - 448
Target Start/End: Complemental strand, 3387843 - 3387610
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  | |||||||||||||||||||  | || ||||| ||||||||||||||||||||   ||||||||||||||| ||| ||| |    
T  3387843 agattcaagagttaaagatgtgtgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaa 3387744  T
Q  316 taaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatt 414  Q
    |||||||||| ||||||||||| |||||||||||| | |||||| |||| || |||  || | |||||| |||||||||| |||||||||| ||| ||||    
T  3387743 taaataaaggtcaaatactattttatcttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattttgattctcaatt 3387644  T
Q  415 tagatcttttgtaaataaattaatatataggtag 448  Q
    ||||| |||| |||||||||||||||||| ||||    
T  3387643 tagatattttataaataaattaatatataagtag 3387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 218 - 424
Target Start/End: Original strand, 50127135 - 50127343
Alignment:
Q  218 agattcaagagttaaatctgt--gagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  |||  ||||||| ||||| ||| |||| ||||| ||||||||||||| | || | ||||||||||||||||||||| || ||    
T  50127135 agattcaagagttaaagatgtatgagaaatattgattaacgaggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagat-ga 50127233  T
Q  316 taaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatt 414  Q
     ||||||||| |||||||||||||||||||||||| | |||| | ||||||| |||  || | ||||||||||||||||| |||||||||| | ||| ||    
T  50127234 aaaataaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgcatatgtatgtattttgattattagtt 50127333  T
Q  415 tagatctttt 424  Q
    ||||| ||||    
T  50127334 tagatatttt 50127343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 238 - 431
Target Start/End: Complemental strand, 3955116 - 3954922
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    |||||||||||||||||| |||| ||| | | ||||||||||||||||||   ||||  ||||||||||||| ||||||||||||||| ||||||| ||     
T  3955116 tgagaaatgttgatcaacaaggggttacagagattaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatc 3955017  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaata 431  Q
    ||||||| || || | |||||| ||||||| |||  |||| |||||||||||| |||| |||||| ||| ||| ||||| |||||||| ||||||    
T  3955016 gtatcttattttagaactttttttaatgaaataaattgctcaagttagatgcacatgtatgtattctgattctcaattttgatcttttataaata 3954922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 238 - 405
Target Start/End: Original strand, 48632578 - 48632747
Alignment:
Q  238 tgagaaatgttgatcaacta-gggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| || ||| ||||| | ||||||||||||||||||   ||||  ||||| ||||||| | | ||||||||||| ||||||||||    
T  48632578 tgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactat 48632677  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttga 405  Q
     |||||||||| || | ||||||  |||||| ||| ||||| |||||| || | ||||| || |||||||    
T  48632678 ggtatcttgttttagaacttttttcaatgaaataaactgctcaagttaaattcttatgtatgaattttga 48632747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 429 - 513
Target Start/End: Complemental strand, 32740824 - 32740740
Alignment:
Q  429 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 513  Q
    ||||||||| ||||| |||| |||||| |||||| |  ||||||||||||| ||||||||| || |||||||| |||||||||||    
T  32740824 ataaattaacatatatgtagtggtgtcagtgtcctatattttttacattaatagtgtcgatatgaccgtgtcagtgtcgtgtcag 32740740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 517
Target Start/End: Original strand, 50127494 - 50127590
Alignment:
Q  421 ttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||| ||||||||||||||||||| ||| |||| || ||||| | ||||||||||||| |||| |||| |||||||  | | | |||||||||||||    
T  50127494 ttttataaataaattaatatatagatagcggtggcgatgtcctatgttttttacattagcagtatcgacgtgtccggattagtatcgtgtcaggtgt 50127590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 126419 - 126323
Alignment:
Q  238 tgagaaatgttgatcaactagggt--ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatac 333  Q
    ||||||||||||||||| |||||   ||||| |||||||||||||||| ||||  ||||| |||||  |||||| ||| ||||||||||| |||||||    
T  126419 tgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaacttttt-aatagtagatgaataaataaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 517
Target Start/End: Complemental strand, 23431980 - 23431752
Alignment:
Q  291 tttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgca 389  Q
    ||||| ||||| ||||||| ||| |||||| || | |||||||||   ||| ||||| || | |||||||||||||| |||  |||| |||||||||||     
T  23431980 tttaacttttttgatagtagatgaataaatgaatgtcaaatactacgatattttgttttagaactttttctaatgaaataacttgctcaagttagatgct 23431881  T
Q  390 tatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccga-ggttttttacattaacagtgtcga 488  Q
    ||| | |||||||||| | | | |||||| | | | |||||||||||| ||||| ||||   ||||||| ||| |   ||||||||| || |||||| ||    
T  23431880 tatatatgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcactgtcggtatcctatatttttttacactaccagtgttga 23431781  T
Q  489 tgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
     ||||  |||||| |||||| ||||||||    
T  23431780 agtgtttgtgtcagtgtcgtatcaggtgt 23431752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 48632329 - 48632405
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaa 85  Q
    ||||| ||||||| ||||| || ||||||||| |||||||||||| | ||||||| | || |||||| |||||||||    
T  48632329 agcacggacacctctaggactaggcgtgtcgcggtgtccgacactcccatgacactcgtatgacacgcgtcggacaa 48632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 367
Target Start/End: Original strand, 9148996 - 9149123
Alignment:
Q  240 agaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgt 339  Q
    |||||||| |||||| | | | ||||| ||||||||||||  || ||||  ||||  ||||| ||||||| ||  |||||||||||  |||||||||  |    
T  9148996 agaaatgtagatcaattggtggttatagacattaaagttggctataacatttttagcttttttgatagtagataaataaataaaggtaaaatactatgat 9149095  T
Q  340 atcttgttatatacctttttctaatgaa 367  Q
    |||||||| || || |||||||||||||    
T  9149096 atcttgttttaaacttttttctaatgaa 9149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 40 - 501
Target Start/End: Complemental strand, 17651628 - 17651161
Alignment:
Q  40 cagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtg-ccaaaatgagttgttttctactttattttgacactccttggaccggtgtt 138  Q
    ||||||||||||||  ||||||||   ||| |||| ||||| ||||||| || |||| ||||||||||| ||||| || |||||||||| |||||||||     
T  17651628 cagtgtccgacactcttatgacacttgtacaacac-tgtcgaacaagtgtcctaaat-agttgttttcttctttacttcgacactcctttgaccggtgtc 17651531  T
Q  139 tgacacctataataca----tat-aggcgtgtcgggcaactcaaataaatatcaggatt-atttttctttacttccacacacaacagattcaagagttaa 232  Q
     ||||| ||||  |||    ||| ||||||||||| ||||| | | |||||||  |||| ||||||||   ||| ||||||||| |||||||||||||||    
T  17651530 cgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatctagatttatttttctg--ctttcacacacaatagattcaagagttaa 17651433  T
Q  233 a--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaa 330  Q
    |  | ||||| |||||||||||||| || | ||||| ||||||||||||||||||||  |||||| |||||| |||||| ||||||||||||||| ||||    
T  17651432 aggtgtgtgaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaa 17651333  T
Q  331 tactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaa 429  Q
    || ||||||| ||||||||| | ||| || ||||||| |||  |||| ||||||||||||||||| |||||||||  | |||||||||||||| | ||||    
T  17651332 tattattgtaacttgttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaatttagatcttatataaa 17651233  T
Q  430 taaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 501  Q
    |||||||||||||||  || |||||| || ||| | |||||||| |||| |  |||||| |||| |||||||    
T  17651232 taaattaatatatagccagcggtgtcagtatcctatgttttttatattagcgatgtcgacgtgttcgtgtca 17651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 70 - 500
Target Start/End: Complemental strand, 41849347 - 41848922
Alignment:
Q  70 gacacgtgtcggacaagtg-ccaaaatgagttgttttctactttattttgacactccttggaccggtgtttgacacctataataca----tat-aggcgt 163  Q
    ||||||| ||| ||||||| || |||| |||| ||||||  ||||||| |||||||||||||| |||||  ||||||||||  |||    ||| ||||||    
T  41849347 gacacgtatcgaacaagtgtcctaaataagttattttcttttttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgt 41849248  T
Q  164 gtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggt 261  Q
    ||||| ||||||||| |||| || | ||| ||||||| | |||||||| |  |  ||||||||| |||||  | ||||||||| ||||| |||| |||      
T  41849247 gtcggacaactcaaacaaatgtctgaatt-tttttctctgcttccacatagta--gattcaagaattaaagatgtgtgagaaaagttgagcaacgaggca 41849151  T
Q  262 ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttct 361  Q
    || |  |||||||||||||||||||    ||| |||||||| ||| || |||||||| |||| | ||||||          |||||||| |||||||| |    
T  41849150 ttctggacattaaagttgattacaatgttttttaatttttcaataataaatggataa-taaaagccaaata----------ttgttatagaccttttttt 41849062  T
Q  362 aatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgt 460  Q
    |||||| |||  |||| ||||||||| ||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||| ||| |||||||||||    
T  41849061 aatgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgt 41848962  T
Q  461 ccgaggttttttacattaacagtgtcgatgtgtccgtgtc 500  Q
    || |  |||||||||||| | ||||||||||||| |||||    
T  41848961 cctatattttttacattagcggtgtcgatgtgtcagtgtc 41848922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 305 - 517
Target Start/End: Original strand, 38783673 - 38783886
Alignment:
Q  305 tagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgcta-agttagatgcatatgtttgtatttt 403  Q
    ||||| ||||||||||||| | |||||| | ||||||||||||||| | |||||| ||||||| |||  |||   || |||||| |||||| ||||||||    
T  38783673 tagtagatggataaataaatgtcaaatattgttgtatcttgttataaaactttttttaatgaaataaattgccctagatagatgtatatgtatgtatttt 38783772  T
Q  404 gactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcact 503  Q
    || ||| |||| |||| |||| ||||||||||||||||||| |||  | ||||||||||   |  |||||||||| || ||||||||||||||||||| |    
T  38783773 gattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcctctgacttttacattagcaatgtcgatgtgtccgtgtcagt 38783872  T
Q  504 gtcgtgtcaggtgt 517  Q
     |||||||||||||    
T  38783873 atcgtgtcaggtgt 38783886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 517
Target Start/End: Original strand, 32200878 - 32201099
Alignment:
Q  297 tttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtt 395  Q
    ||||| ||||||| ||| ||||||||||| ||||||||||  ||||||||| || | |||||||||||||  |||  |||| ||||||||||  ||| |     
T  32200878 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatata 32200977  T
Q  396 tgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtcc 495  Q
    |||||||| | | | | |||||| | | | |||||||||||| |||||  ||  ||||||||||||| |  |||||||||||| | ||||||| ||||||    
T  32200978 tgtattttaattttcattttagaccgtctttaaataaattaacatatatttaatggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtcc 32201077  T
Q  496 gtgtcactgtcgtgtcaggtgt 517  Q
    |||||| |||||||||||||||    
T  32201078 gtgtcagtgtcgtgtcaggtgt 32201099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 517
Target Start/End: Complemental strand, 9929737 - 9929517
Alignment:
Q  298 ttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgttt 396  Q
    |||| ||||||| ||| ||||||||||| ||||||||||  ||||||||| || | |||||||||||||| |||  |||| || |||||||  ||| | |    
T  9929737 tttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgaaataaattgctcaaattagatgtttatatat 9929638  T
Q  397 gtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccg 496  Q
    ||||||| | | | | |||||| | | | |||||||||||| ||||| ||||  |||| ||||||| |  |||||||||||| | ||||||| |||||||    
T  9929637 gtattttaattttcattttagaccgtctttaaataaattaacatatatgtagcagtgttggtgtcctatattttttacattagcggtgtcgacgtgtccg 9929538  T
Q  497 tgtcactgtcgtgtcaggtgt 517  Q
    ||||| |||||||||| ||||    
T  9929537 tgtcagtgtcgtgtcaagtgt 9929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 158 - 325
Target Start/End: Original strand, 18724652 - 18724819
Alignment:
Q  158 aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaac 255  Q
    ||||||||| | ||||||| | ||||||| | |||  |||||| ||||||| |||| |  ||||||||||||||||  | ||||||||||| ||||||||    
T  18724652 aggcgtgtcagacaactcagacaaatatctgaatt--ttttctctacttccgcacatagtagattcaagagttaaagatgtgtgagaaatgctgatcaac 18724749  T
Q  256 tagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagg 325  Q
     |||  ||||| |||| ||||||||| ||| | |||||||||||| | |||||| ||||||||| |||||    
T  18724750 gaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggataaagaaagg 18724819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 238 - 501
Target Start/End: Original strand, 34409577 - 34409843
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc-gatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  |||||| ||  ||| ||  ||||||||||| ||||||||||    
T  34409577 tgagaaatgttgatcaattaggggttatagacattatagttgattatatcatttttagctttttctgacggtagataaataaataaaggtcaaatactat 34409676  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttag-atcttttgtaaataaat 434  Q
      ||||||||| || | |||||||||||||   ||| |||| ||||||||||  ||| | |||||||| | | || |||| | | | | | |||||||||    
T  34409677 aatatcttgttgtagaactttttctaatgactaaat-tgctcaagttagatgtttatatatgtattttaattttttattttggaccgtctataaataaat 34409775  T
Q  435 taatatataggtagaggtgtcggtgtccgaggtttt-ttacattaacagtgtcgatgtgtccgtgtca 501  Q
    |||||||||  ||  ||||||||||||| || |||| |||||||| | ||||||||||||||||||||    
T  34409776 taatatatatctaatggtgtcggtgtcctagatttttttacattagcggtgtcgatgtgtccgtgtca 34409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 44649966 - 44650077
Alignment:
Q  242 aaatgttgatcaactagggt-ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgta 340  Q
    ||||||||||||| |||||  ||||| | |||||||||||||||||||  ||||| ||||| ||||||| ||| ||||||||||| ||||| |||| |||    
T  44649966 aaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggta 44650065  T
Q  341 tcttgttatata 352  Q
    ||||||| ||||    
T  44650066 tcttgttttata 44650077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 318 - 478
Target Start/End: Original strand, 16661253 - 16661414
Alignment:
Q  318 aataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaattta 416  Q
    ||||||||  |||||||||  ||||||||| || | |||||| |||| || |||  |||| ||||||||| || |||| |||||| ||| ||| ||||||    
T  16661253 aataaaggttaaatactatcctatcttgttttagaactttttttaataaaataaattgctcaagttagatacacatgtatgtattctgattctcaattta 16661352  T
Q  417 gatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 478  Q
    |||||||| || || |||||||||||| |||| ||| ||||||||| | |||| ||||||||    
T  16661353 gatcttttatacatgaattaatatatatgtagcggtatcggtgtccaatgtttattacatta 16661414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 18724896 - 18724959
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccga-ggttttttacattaacagtgtcga 488  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| | |||||||    
T  18724896 taaataaattaatatataggtagcggtgtcggtgtcctatggttttttacattatcggtgtcga 18724959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 26576227 - 26576021
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||| | ||| | ||||| |||||| ||||||||| | |   ||||  || || ||||||| ||| ||||||||||| ||||||||||     
T  26576227 tgagaaatgttgatcgattagtggttatagacattatagttgattatatcgtttttagcttatttgatagtagatgaataaataaaggtcaaatactatg 26576128  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     ||||||||| || | |||||||||||||  |||  |||| ||||||||||  ||| | |||||||| | | | | |||||||| | | |||||||||||    
T  26576127 atatcttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatatatgtattttaattttcattttagatcgtctttaaataaatta 26576028  T
Q  437 atatata 443  Q
    | |||||    
T  26576027 aaatata 26576021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 486
Target Start/End: Complemental strand, 27004133 - 27003952
Alignment:
Q  306 agtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttg 404  Q
    |||| ||| ||||||||||| ||||||||||  |||||||||  | | |||||| ||||||| |||  | || ||||||||||  ||| | ||||||||     
T  27004133 agtagatgaataaataaaggtcaaatactatgatatcttgttggagaactttttttaatgaaataaatttctcaagttagatgtttatatatgtatttta 27004034  T
Q  405 actcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtc 486  Q
      | | | |||||| | | | |||||||||||| ||||| |||| ||||||||||||| |  ||||||||||||||||||||    
T  27004033 gttttcattttagaccgtctttaaataaattaacatatacgtagcggtgtcggtgtcctatattttttacattaacagtgtc 27003952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 26576472 - 26576401
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| ||||| ||  |||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  26576472 agcacggacacctctaggactagacgtgtcgcggtgtccgacactcctatgacacccgtacgacacgtgtcg 26576401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 4748106 - 4748205
Alignment:
Q  268 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    |||||||||||||||||| ||  ||||  || ||| |||| | ||| ||||||||||| |||||||||| ||| |||||| || | ||||||| ||||||    
T  4748106 acattaaagttgattacagcatttttagtttgttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaa 4748205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 500
Target Start/End: Original strand, 4748269 - 4748318
Alignment:
Q  451 gtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 500  Q
    |||||||||||| |  |||||||||||| | |||||||||||||||||||    
T  4748269 gtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgtgtc 4748318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 170 - 462
Target Start/End: Original strand, 265 - 557
Alignment:
Q  170 caactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataa 267  Q
    ||||||| | ||||||| ||||| ||||| | | |||| |||||||  ||||||||| ||||||  | |||||||||||||||||||| | || ||||      
T  265 caactcagacaaatatctggatttttttt-tctgcttctacacacagtagattcaagggttaaagatgtgtgagaaatgttgatcaacaatgggttatgg 363  T
Q  268 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    |||| |||||||||| ||||  |||| |||||| |||||| | ||||||||||||||| |||||||||||||||||||||||| |  ||||| |||||||    
T  364 acatcaaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaa 462  T
Q  368 gtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtcc 462  Q
     |||| |||| ||||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  463 ataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 218 - 443
Target Start/End: Complemental strand, 209377 - 209151
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  | |||||||||||||||||||| |||| ||||  ||||||||||| ||||||||   ||||||||||||||| ||| |||||    
T  209377 agattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattgtagatgga 209278  T
Q  316 taaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaattt 415  Q
    |||||||||| |||||| | |||||| |||||||| | |||||| ||||||| |||  |||| |||||||||||||||| |||||||||| ||| |||||    
T  209277 taaataaaggccaaatattgttgtattttgttatagaactttttttaatgaaataaattgct-agttagatgcatatgtatgtattttgattctcaattt 209179  T
Q  416 agatcttttgtaaataaattaatatata 443  Q
    |||| |||| ||||||||||||||||||    
T  209178 agatattttataaataaattaatatata 209151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 236 - 517
Target Start/End: Complemental strand, 27401991 - 27401709
Alignment:
Q  236 tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatacta 335  Q
    ||||| |||||||||||||| |||| ||||| ||||||||||||||||||||   |||   | |||| |||||| ||||||||||||||| ||||| |||    
T  27401991 tgtgaaaaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattcta 27401892  T
Q  336 ttgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaat 434  Q
    ||||||||||||||||| |||||| ||||||| |||  |||| |||||||||||| |||| | |||||||| ||| |||| |||  |||| |||||||||    
T  27401891 ttgtatcttgttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagacattttataaataaat 27401792  T
Q  435 taatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||| ||| ||| | || |||| | ||||||||||||| | |||| |  |||||||||||| |||| | ||||||||    
T  27401791 taatatatagatagcggtattggcgtcctatgttttttacattagcggtgttggcgtgtccgtgtcagtgtcctatcaggtgt 27401709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 218 - 448
Target Start/End: Original strand, 18393525 - 18393758
Alignment:
Q  218 agattcaagagttaaatctgtg--agaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  ||||  |||||||||||||||  | || ||||| ||||||||||||||||||||   ||||||||||| ||||||| |||||    
T  18393525 agattcaagagttaaagatgtgcgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatgga 18393624  T
Q  316 taaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatt 414  Q
    |||||||||| ||||||||||| |||||||||||| | |||||| |||| || |||  || | |||||| |||||||||| |||||| ||| ||| ||||    
T  18393625 taaataaaggtcaaatactattttatcttgttataaaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattatgattctcaatt 18393724  T
Q  415 tagatcttttgtaaataaattaatatataggtag 448  Q
    ||||| |||| ||| |||||||||||||| ||||    
T  18393725 tagatattttataagtaaattaatatataagtag 18393758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 507
Target Start/End: Complemental strand, 3159963 - 3159736
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaa 371  Q
    ||||||||||||||||   |||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| |||    
T  3159963 taaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgttatagacctttttttaatgaaataa 3159864  T
Q  372 tctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggtttt 470  Q
      |||| ||||||||| ||||         ||||| ||| |||||||||||||  ||||||||||| |||| ||||||  |||||||||||| | |||||    
T  3159863 attgctcaagttagatacata---------tttgattctcaatttagatctttcataaataaattagtatacaggtagcagtgtcggtgtcctatgtttt 3159773  T
Q  471 ttacattaacagtgtcgatgtgtccgtgtcactgtcg 507  Q
    |||||||| | ||||  | ||||| |||||| |||||    
T  3159772 ttacattagcggtgttaacgtgtcagtgtcagtgtcg 3159736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 13097841 - 13097405
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtg-ccaaaatgagttgttttct 107  Q
    ||||||||||| | ||| |||| ||||||||| ||||||||||||  |||||||| | ||||||||| |||||| ||||  || |||| || | ||||||    
T  13097841 agcacagacac-tctagaattaggcgtgtcgcggtgtccgacactcatatgacactcgtacgacacgagtcggataagtatcctaaataagatattttct 13097743  T
Q  108 actttattttgacactccttggaccggtgtttgacacctataataca----tat-aggcgtgtcgggcaactcaaataaatatcaggattatttt-tctt 201  Q
     ||||| | ||||||||||| |||||||||  ||||||||||  |||    ||| | ||||||||| ||| ||||| |||| |  |  || |||| |||     
T  13097742 tctttactgtgacactccttagaccggtgtgcgacacctatataacacttatatgaagcgtgtcggacaattcaaacaaatgtttgattttttttgtctc 13097643  T
Q  202 tacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaattt 299  Q
    | ||||||||||||  ||||||||||||||||  | |||||||||||||||||||| || | ||||  |||||||||||||||| ||||  ||| |||||    
T  13097642 tgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacaagaggttatggacattaaagttgattaaaacattttttaattt 13097543  T
Q  300 ttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgc-taagttagatgcatatgtttgt 398  Q
    ||| |||||| ||| ||||||||     |||| | ||   || |||||||  | |||||| ||||||| |||  ||| | |||||||||||||||| |||    
T  13097542 ttcaatagtagatgaataaataa-----aaat-cgatcaaatattgttatggaactttttttaatgaaataaattgcttgagttagatgcatatgtatgt 13097449  T
Q  399 attttgactcttaatttagatcttttgtaaataaattaatatat 442  Q
    ||||||| ||| ||||||||| |||| |||||||||||||||||    
T  13097448 attttgattctcaatttagatattttataaataaattaatatat 13097405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 272 - 394
Target Start/End: Original strand, 2875409 - 2875532
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaa 371  Q
    ||||||||||||||||   |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |||    
T  2875409 taaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttttttaatgaactaa 2875508  T
Q  372 tctgct-aagttagatgcatatgt 394  Q
      |||| ||||||||| |||||||    
T  2875509 attgctcaagttagatacatatgt 2875532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 394
Target Start/End: Complemental strand, 2796326 - 2796200
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttct---aatgaag 368  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||| |   ||||||     
T  2796326 taaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccttttttttttaatgaaa 2796227  T
Q  369 taatctgct-aagttagatgcatatgt 394  Q
    |||  |||| |||||||||||||||||    
T  2796226 taaattgctcaagttagatgcatatgt 2796200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 2889764 - 2889859
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    ||||||||| ||||||   ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||    
T  2889764 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaa 2889859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 3145371 - 3145276
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    ||||||||| ||||||   ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||    
T  3145371 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaa 3145276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 517
Target Start/End: Original strand, 15850511 - 15850732
Alignment:
Q  297 tttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtt 395  Q
    ||||| ||||||| ||| ||||||||| | |||||||| |  ||||||||| |||| |||||||||||||| |||| |||| || |||||| | ||| |     
T  15850511 ttttttgatagtagatgaataaataaatgtcaaatactgtgatatcttgttttataactttttctaatgaaataatttgctcaaattagatacttatata 15850610  T
Q  396 tgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtcc 495  Q
    |||||||||| | | | ||||||   | | ||||||||||||||||||  ||  ||||||||||||| |  ||||||||| |||||||||||| ||||||    
T  15850611 tgtattttgattttcattttagactatctataaataaattaatatatacataatggtgtcggtgtcctatattttttacactaacagtgtcgaagtgtcc 15850710  T
Q  496 gtgtcactgtcgtgtcaggtgt 517  Q
     | ||| |||||||||||||||    
T  15850711 atatcagtgtcgtgtcaggtgt 15850732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 517
Target Start/End: Complemental strand, 1226245 - 1225942
Alignment:
Q  218 agattcaagagttaaatctgtg---agaaatgttgatcaactag-ggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatg 313  Q
    |||| |||||||||||| ||||   ||||||||| ||||| ||| |||||||| | |||||||||||||||||||  ||||||||||| ||||||| |||    
T  1226245 agatacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttgattacaacatttttaaattttt-gatagtagatg 1226147  T
Q  314 gataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgc-taagttagatgcatatgtttgtattttgactcttaa 412  Q
     ||||||||||  |||||||| | |||||||||| |||| ||||||  |||||| |||  ||| ||| ||| |||  ||  | |||||||||| | | |     
T  1226146 aataaataaagatcaaatactctggtatcttgttttataacttttttcaatgaaataaattgcttaatttatatgtttacatatgtattttgattttcat 1226047  T
Q  413 tttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtca 512  Q
    |||||| | | | ||||||||||| |||||| || | |||||| |||||  |  | ||||| |||||  ||||||| |||||||| | | ||||||||||    
T  1226046 tttagaccctctataaataaattactatatatgtggtggtgtcagtgtcgtaaatattttatattaatggtgtcgacgtgtccgtattaatgtcgtgtca 1225947  T
Q  513 ggtgt 517  Q
    |||||    
T  1225946 ggtgt 1225942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 328 - 497
Target Start/End: Complemental strand, 28867364 - 28867194
Alignment:
Q  328 aaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgt 426  Q
    |||| ||||| |||||||| ||||| |||||| ||||||| |||  | || ||||||||||||||| | |||||||||| ||| |||||| || |||| |    
T  28867364 aaatgctattatatcttgtgatatatctttttttaatgaaataaattacttaagttagatgcatatatatgtattttgattctcaatttaaatgttttat 28867265  T
Q  427 aaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgt 497  Q
    |||||||||||||||||| |||  |||| ||||||  | ||||| |||||||   ||||||||||||||||    
T  28867264 aaataaattaatatatagatagtagtgttggtgtcttatgttttatacattagttgtgtcgatgtgtccgt 28867194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 2874854 - 2874983
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgc-caaaatgagttgttttct 107  Q
    ||||| ||||||| |||||||| || |||||| || ||||||||  ||||||||| ||||| ||||||||| ||||||||  | |||| | | |||||||    
T  2874854 agcacggacacctctaggattacgcatgtcgcggtctccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttct 2874953  T
Q  108 actttattttgacactccttggaccggtgt 137  Q
     ||||||||||||||||||||||| |||||    
T  2874954 tctttattttgacactccttggactggtgt 2874983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 328 - 497
Target Start/End: Complemental strand, 28869927 - 28869758
Alignment:
Q  328 aaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgt 426  Q
    |||| ||||| |||||||| ||||| |||||| ||||||| |||  |  | ||||||||||||||||| |||||||||| ||| |||||| || |||| |    
T  28869927 aaatgctattatatcttgtgatatatctttttttaatgaaataaattatttaagttagatgcatatgtatgtattttgattctcaatttaaatattttat 28869828  T
Q  427 aaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgt 497  Q
    |||||||||||||||||| |||  ||||  |||||  | | ||||||| ||| | ||||||||||||||||    
T  28869827 aaataaattaatatatagatagtagtgtttgtgtcttatg-tttttacgttagctgtgtcgatgtgtccgt 28869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 513
Target Start/End: Complemental strand, 28421207 - 28420931
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    |||||||| |||||||| ||| | ||||| |||||| ||||||||| | |   ||||  ||||| ||||||| ||| ||||||||||| |||||  |||     
T  28421207 tgagaaatcttgatcaattagtggttatagacattatagttgattatatcgtttttagcttttttgatagtagatgaataaataaaggtcaaatcatatg 28421108  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     ||||||||| || | |||||||||||||  |||  |||| |||||| |||  ||| | |||||||| | | | | |||||| | | | |||||||||||    
T  28421107 atatcttgttgtaaaactttttctaatgacataaattgctcaagttaaatgtttatatatgtattttaattttcattttagaccgtctttaaataaatta 28421008  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 513  Q
    | ||||| |||  ||||||||||||| |  |||| ||||||| | ||||| | |||||| ||||| |||||| ||||    
T  28421007 acatatatgtaatggtgtcggtgtcctatattttctacattagcggtgtcaacgtgtccatgtcagtgtcgtatcag 28420931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 15131966 - 15132071
Alignment:
Q  240 agaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgt 339  Q
    |||||| |||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  ||||||||||||| ||  ||||||||||  ||||||||||  |    
T  15131966 agaaatattgatcaattaggggttatagacattatagttgattatatcatttttagctttttcgatagtagataaataaataaagatcaaatactatgat 15132065  T
Q  340 atcttg 345  Q
    ||||||    
T  15132066 atcttg 15132071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 478
Target Start/End: Complemental strand, 37855266 - 37855085
Alignment:
Q  298 ttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgttt 396  Q
    |||| ||||||| ||| |||||||||||  |||||||||| |||||||||  ||| |||||||| ||||| |||  | || || |||||||  ||| | |    
T  37855266 tttttgatagtagatgaataaataaaggttaaatactattatatcttgttgcataactttttctcatgaaataaatttctcaaattagatgtttatatat 37855167  T
Q  397 gtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 478  Q
    ||||| | | | ||| |||||| | | | ||||||||| || ||||| |||| ||||||||||||| |  ||||||||||||    
T  37855166 gtattataatttttattttagaccgtctttaaataaatgaacatatatgtagcggtgtcggtgtcctatattttttacatta 37855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 501
Target Start/End: Original strand, 18603242 - 18603317
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 501  Q
    |||||||||||| || || ||||||||| |||||||| |  ||||||||| |||| ||||||| ||||| ||||||    
T  18603242 taaataaattaacatgtatgtagaggtgccggtgtcctatattttttacactaacggtgtcgaagtgtctgtgtca 18603317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 31772606 - 31772559
Alignment:
Q  240 agaaatgttgatcaactagggtttataaacattaaagttgattacaac 287  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||    
T  31772606 agaaatgttgatcaacaaggggttaccaacattaaagttgattacaac 31772559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 2797320 - 2797251
Alignment:
Q  69 cgacacgtgtcggacaagtgc-caaaatgagttgttttctactttattttgacactccttggaccggtgt 137  Q
    ||||||||||| ||||||||  | |||| | | ||||||| ||||||||||||||||||||||| |||||    
T  2797320 cgacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgt 2797251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 347
Target Start/End: Complemental strand, 44502457 - 44502348
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||  | ||||| ||||| |||||| ||||||||| |  |  ||||| ||||| ||||| | ||| ||||||||||| |||||| |||     
T  44502457 tgagaaatgttgattgattaggggttatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaaggtcaaatagtatg 44502358  T
Q  338 gtatcttgtt 347  Q
     |||||||||    
T  44502357 atatcttgtt 44502348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 218 - 439
Target Start/End: Complemental strand, 27994093 - 27993866
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaa---cacatttaaatttttcgatagtacat 312  Q
    ||||||||||||||||  | |||||||||| || |||||  |||||||||| ||||||||||| |||||||   ||  ||||||||||||||| ||| ||    
T  27994093 agattcaagagttaaagatgtgtgagaaatatttatcaaggagggtttatagacattaaagtttattacaaatgcatttttaaatttttcgatggtagat 27993994  T
Q  313 ggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactctta 411  Q
    ||||||||||||  ||| | |||||||||||||||||| | |||| | ||||||| |||  |||| |||||| |||||||||| |||||||||| |||||    
T  27993993 ggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgcatatgtatgtattttgattctta 27993894  T
Q  412 atttagatcttttgtaaataaattaata 439  Q
     |||| ||||||| ||||||||||||||    
T  27993893 gtttatatcttttataaataaattaata 27993866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 194 - 472
Target Start/End: Original strand, 11820479 - 11820752
Alignment:
Q  194 tttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacat 291  Q
    ||||||| | ||||||||||||  ||||||||||||||||  | |||||||||||||||||||| | || ||||| ||||||||| |||||||||||  |    
T  11820479 tttttctctgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacattt 11820578  T
Q  292 ttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcat 390  Q
    ||||| ||||  |||||| ||  ||||||||||  ||||| ||||||||| |||| ||| | ||||||  |||||| |||  |||| |||||||||||||    
T  11820579 ttaaaatttttaatagtagataaataaataaagctcaaatgctattgtatgttgtcatagaacttttt-gaatgaaataaattgctcaagttagatgcat 11820677  T
Q  391 atgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggtttttt 472  Q
    |||| |||||||||  ||  ||||| ||       ||||||||||||||||||||||| ||||||||||||| | |||||||    
T  11820678 atgtatgtattttgcttcgcaattttga-------taaataaattaatatataggtagtggtgtcggtgtcctatgtttttt 11820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 238 - 462
Target Start/End: Original strand, 37338759 - 37338984
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| | ||||  ||||| ||||| ||||||| ||| ||||||||||| ||||||||||     
T  37338759 tgagaaatgttgatcaattagggattttaaacattaaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactatg 37338858  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     |||||||||  ||| | |||||||||||| |||| |||| ||||||||||| ||| | |||||||||| | | ||||||||   | | |||||||||||    
T  37338859 atatcttgtttgataacattttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcaatttagactgtctataaataaatta 37338958  T
Q  437 atatataggtagaggtgtcggtgtcc 462  Q
    | ||||| |||  |||| ||||||||    
T  37338959 acatatatgtaacggtgccggtgtcc 37338984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 238 - 518
Target Start/End: Complemental strand, 27616492 - 27616210
Alignment:
Q  238 tgagaaatgttgatcaactagggt-ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||| || |||| |||||  ||||| |||||||||||||||| ||||  ||||  ||||  ||||||| ||| ||||||||| | ||||||||||    
T  27616492 tgagaaatgatggtcaattagggggttatagacattaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatactat 27616393  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatt 435  Q
      ||||||||| || | ||| ||||||| || ||| ||||| |||| |||||| |||||  ||| ||||| | | | |||||| |   | ||||||||||    
T  27616392 gatatcttgttttagaacttgttctaattaaataaactgctcaagtaagatgcttatgtacgtactttgattttcattttagaccacctataaataaatt 27616293  T
Q  436 aatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgta 518  Q
    || ||| | |||| |||||||||||||    |||||||||||||| |||||||  ||||||||||| | ||||||||||||||    
T  27616292 aacatacatgtagcggtgtcggtgtcctgtattttttacattaacggtgtcgacatgtccgtgtcagtatcgtgtcaggtgta 27616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 268 - 478
Target Start/End: Original strand, 11809304 - 11809507
Alignment:
Q  268 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    |||||||| |||||||||||   ||||||||||| ||  ||| ||| |  |||||||| ||||||||||||||||||||||||||  ||||| |||||||    
T  11809304 acattaaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttatataaattttt-taatgaa 11809402  T
Q  368 gtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgagg 466  Q
     |||  |||| |||||||| |||||||| |||||||||  ||| ||||||||       |||||||||||||||||||||||  |||||||||||  | |    
T  11809403 ataaattgctcaagttagaagcatatgtatgtattttgcttctaaatttaga-------taaataaattaatatataggtagcagtgtcggtgtcttatg 11809495  T
Q  467 ttttttacatta 478  Q
     |||||||||||    
T  11809496 atttttacatta 11809507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 158 - 335
Target Start/End: Original strand, 9729790 - 9729969
Alignment:
Q  158 aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaac 255  Q
    ||||||||||| ||||||||| |||||||  ||||  |||| | | ||| |||||  |   |||||||||||||||  | ||||||||||||||||||||    
T  9729790 aggcgtgtcggacaactcaaacaaatatctagatttattttttctgctttcacacggagtggattcaagagttaaagatgtgtgagaaatgttgatcaac 9729889  T
Q  256 tagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatacta 335  Q
     |  | || |  |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||  |||||||||    
T  9729890 gaaaggttttttacattaaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 478
Target Start/End: Original strand, 9730062 - 9730144
Alignment:
Q  396 tgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 478  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | |  ||||||||||||    
T  9730062 tgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtcagtgttctatattttttacatta 9730144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 597 - 707
Target Start/End: Complemental strand, 17875158 - 17875048
Alignment:
Q  597 agagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgat 696  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||||||||||   | |||||||||||| || || || |||||||| || || ||||||    
T  17875158 agagggatattgttggacaaggacaagtggaagacaagctgcaagaatgagatacaagtacttaaaagcagtacttaggcaagaagttgcttattttgat 17875059  T
Q  697 ttgcatgttac 707  Q
    ||||| |||||    
T  17875058 ttgcaggttac 17875048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 205 - 404
Target Start/End: Original strand, 11810876 - 11811077
Alignment:
Q  205 ttccacacacaacagattcaagagttaaatc--tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc 302  Q
    ||||||||| |  |||||||||||||||| |  |||||||||||||||||| | |||||||||| |||| |||  |||| ||  |   ||||||||||      
T  11810876 ttccacacaaagtagattcaagagttaaagccttgtgagaaatgttgatcagcgagggtttatagacataaaaaatgataacggcgtttttaaattttat 11810975  T
Q  303 gatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtatt 401  Q
    || |||| ||  || |||||||| |||||| ||||||||||||||| |||  ||||| ||||||| |||  |||| |||||||| |||||||| ||||||    
T  11810976 gacagtagataaattaataaaggtcaaatattattgtatcttgttagataaattttt-taatgaaataaattgctcaagttagaggcatatgtatgtatt 11811074  T
Q  402 ttg 404  Q
    |||    
T  11811075 ttg 11811077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 48598495 - 48598361
Alignment:
Q  219 gattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtaca-tgga 315  Q
    |||||||||||||||  | |||||||||||||||||||  |||||  ||| | |||||||||| |||||||   ||| ||||||| |||| || | ||||    
T  48598495 gattcaagagttaaagatgtgtgagaaatgttgatcaatgagggtc-atagatattaaagttggttacaacgttttttaattttttgata-tatagtgga 48598398  T
Q  316 taaataaagggcaaatactattgtatcttgttatata 352  Q
    |||||||||| |||||||||||||||| |||||||||    
T  48598397 taaataaaggtcaaatactattgtatcgtgttatata 48598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 317 - 462
Target Start/End: Original strand, 11816926 - 11817064
Alignment:
Q  317 aaataaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaattt 415  Q
    ||||||||| ||||||| ||||||||||||||||||  ||||| ||||||| |||  |||| | ||||||||| ||||| |||||||||  ||| |||||    
T  11816926 aaataaaggtcaaatacgattgtatcttgttatataaattttt-taatgaaataaattgctcatgttagatgcttatgtatgtattttgcttctcaattt 11817024  T
Q  416 agatcttttgtaaataaattaatatataggtagaggtgtcggtgtcc 462  Q
    |||       ||||||||||||||||||||||| |  ||||||||||    
T  11817025 aga-------taaataaattaatatataggtagcgacgtcggtgtcc 11817064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 32716528 - 32716635
Alignment:
Q  257 agggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctt 356  Q
    |||| ||||| |||||||| |||||| || ||  ||||| ||||||||||||  ||| ||||||||||  ||||||||||||||||||||| || | |||    
T  32716528 agggattatagacattaaaattgattgcaccatttttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttagaactt 32716627  T
Q  357 tttctaat 364  Q
    ||| ||||    
T  32716628 tttttaat 32716635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 43837406 - 43837497
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||||||||||  |||| ||||||  |||||   ||||||||||||| ||||||||| |||||||||||| ||| |||| ||||||    
T  43837406 taaataaattaatatatgtgtagtggtgtcaatgtcctgagttttttacattagcagtgtcgaggtgtccgtgtcagtgttgtgtaaggtgt 43837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 5741657 - 5741583
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 500  Q
    ||||| |||||||||||  |||| ||||||||||| | | |||||||||||||||||||| |||||||| |||||    
T  5741657 taaattaattaatatatgtgtagcggtgtcggtgttctaagttttttacattaacagtgttgatgtgtcagtgtc 5741583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 11812686 - 11812759
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 499  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||||| | ||||| | ||||| ||||    
T  11812686 taaataaattaatatataggtagctgtgtcggtgtcctatgttttttacattagcggtgtcaacgtgtctgtgt 11812759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 44572283 - 44572354
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| || || || ||||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  44572283 agcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 44572354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 517
Target Start/End: Original strand, 45216141 - 45216191
Alignment:
Q  467 ttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  45216141 ttttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgt 45216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 6439873 - 6439784
Alignment:
Q  270 attaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatataccttttt 359  Q
    |||||||||||||||||||  ||||  |||||||||||||  || ||||||| | | |||||||||| |||||||||  |||| ||||||    
T  6439873 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgtgttataacttttt 6439784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 11809061 - 11809156
Alignment:
Q  32 gcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgcca-aaatgagttgttttctactttattttgacactcct 126  Q
    ||||||||| ||||| ||||||   || |||||||||||||| |||||||||||||| || |||  |||| |||||| ||||| ||||||| ||||    
T  11809061 gcgtgtcgcggtgtctgacactataataacacacatacgacatgtgtcggacaagtgtcataaacaagttattttcttctttactttgacattcct 11809156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 238 - 500
Target Start/End: Original strand, 32676631 - 32676893
Alignment:
Q  238 tgagaaatgttgatcaactagggtt-tataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    |||||||||||| |||| |||||   |||| |||||||||||||||| ||||  ||||| ||||| ||||||| ||| |||||||| |  |||||| |||    
T  32676631 tgagaaatgttgttcaattagggggatatagacattaaagttgattataacatttttaacttttttgatagtagatgaataaataa-gatcaaataatat 32676729  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
      ||||||||| |||| |||||||||||||| |||  |||| | |||||||| ||||| |||||||||| | | | |||||| | | |  ||||||||||    
T  32676730 gatatcttgttttataactttttctaatgaaataaattgctcaattagatgcttatgtatgtattttgattttcattttagaccgtctaaaaataaatta 32676829  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 500  Q
    | ||||| ||||  | |||||||||| |  |||||||||||| | ||||||| ||||| |||||    
T  32676830 acatatatgtagcagggtcggtgtcctattttttttacattagcggtgtcgacgtgtcagtgtc 32676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 4112040 - 4111966
Alignment:
Q  380 gttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgt 454  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||| |||| |||||    
T  4112040 gttagatgcatatgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 517
Target Start/End: Complemental strand, 40837889 - 40837692
Alignment:
Q  321 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 419  Q
    ||||| |||||||||   ||||||||| || | |||||||||||||| |||| |||| ||||||||||| ||| | |||||||||| | | | ||||||     
T  40837889 aaaggtcaaatactacaatatcttgttttagaactttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttagac 40837790  T
Q  420 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    | | | |||||||||||| |||||  ||| |||||| |||||  |  ||||||||| || | || || | |||||||||||| | |||||||||||||    
T  40837789 cgtatataaataaattaacatatatctagcggtgtcagtgtcttatattttttacactagcggtatcaaagtgtccgtgtcattatcgtgtcaggtgt 40837692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 41815782 - 41815871
Alignment:
Q  411 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 501  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||||||||||| |  |||||||||||| | ||||| |  |||||||||||    
T  41815782 aatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtccta-tttttttacattagcggtgtctaattgtccgtgtca 41815871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 38989252 - 38989374
Alignment:
Q  242 aaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtat 341  Q
    ||||||||||||| ||||| ||||| ||||||   ||||||| | ||  ||||||| ||| ||||||| ||| ||||||||| | ||||||||||  |||    
T  38989252 aaatgttgatcaattaggggttatagacattat--ttgattatatcatttttaaatcttttgatagtagatgaataaataaaagtcaaatactatgatat 38989349  T
Q  342 cttgttatatacctttttctaatga 366  Q
    |||||| || | |||||||||||||    
T  38989350 cttgttgtagaactttttctaatga 38989374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 40838068 - 40837975
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaata 332  Q
    ||||||||||||||||| ||||| | |||||||||| |||| |||| ||||  ||||  ||||| ||||||| ||| ||||||||||| ||||||    
T  40838068 tgagaaatgttgatcaattaggggtaataaacattatagtttattataacatttttagcttttt-gatagtagatgaataaataaaggtcaaata 40837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 42718559 - 42718665
Alignment:
Q  204 cttccacacacaacagattcaagagttaaatc-tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc 302  Q
    ||||||||||||| ||||| |||||||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||| |||| |||||||| |||||    
T  42718559 cttccacacacaatagatttaagagttaaaacgtgtgagaaatgttgaacaacgagggattataaacattaaagttgattccaacgcatttaaaattttc 42718658  T
Q  303 gatagta 309  Q
     ||||||    
T  42718659 aatagta 42718665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 238 - 515
Target Start/End: Original strand, 43921939 - 43922217
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    |||||||||||||||||  |||||| ||  |||||| | ||||||| ||||  ||||  ||||| |||| || ||| ||||||||||  |||||||||      
T  43921939 tgagaaatgttgatcaatcagggttaattgacattacaattgattataacatttttagcttttttgatattagatgaataaataaagatcaaatactacg 43922038  T
Q  338 gtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatta 436  Q
     | ||||||| || | |||||||||||||| |||  |||| ||||||||||  |   | |||||||| | | | |  ||||| | | | |||||||||||    
T  43922039 atgtcttgttttagaactttttctaatgaaataacttgctcaagttagatgtttggatatgtatttttattttcatgttagaccatatataaataaatta 43922138  T
Q  437 atatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggt 515  Q
    | || || |||||||||||||||||| |  ||||||||| || | ||||||| |||||||||||| |||||||||||||    
T  43922139 acatgtatgtagaggtgtcggtgtcctatattttttacactagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggt 43922217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 238 - 499
Target Start/End: Original strand, 21408855 - 21409118
Alignment:
Q  238 tgagaaatgttgatcaactagggtttat-aaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| |||||  ||  |||||||| | ||||||| ||||  |||||  ||||  |||||| ||| ||||||||||| |||||||||     
T  21408855 tgagaaatgttgatcaattagggggtaacaaacattacaattgattataacatttttaaccttttttatagtagatgaataaataaaggtcaaatactac 21408954  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatt 435  Q
      |||||| || || |  ||||||||||||| |||  |||| || |||||| | ||| |||||||||||| | | | |||||| | | | ||||||||||    
T  21408955 gatatcttattttagaattttttctaatgaaataacttgctcaaattagattcttatatttgtattttgattttcattttagaccgtatataaataaatt 21409054  T
Q  436 aatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 499  Q
    || ||||| |||| |||||| || ||| |  |||||||||||||| ||||| ||||||| ||||    
T  21409055 aacatatatgtagcggtgtcagtatcctatattttttacattaacggtgtcaatgtgtctgtgt 21409118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 517
Target Start/End: Complemental strand, 26565288 - 26565197
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||||| ||||| |||  |||||| ||||||    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  26565288 taaataaattaacatatatgtaacggtgtcagtgtcctgtattttttacattagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggtgt 26565197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 462
Target Start/End: Complemental strand, 11410850 - 11410624
Alignment:
Q  238 tgagaaatgttgatcaactagggttta-taaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| |||||  || || | ||||  |||||||| ||||  ||||   |||| ||||||| ||| |||||||||||  ||||||||     
T  11410850 tgagaaatgttgatcaattagggggtaatagatattattgttgattataacagttttagcctttttgatagtagatgaataaataaaggttaaatactac 11410751  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatt 435  Q
      |||||| || || | |||||||||||||| |||  |||| ||||||||||| ||  | |||||||||| | | | |||||| | | | ||||||||||    
T  11410750 gatatcttcttttagaactttttctaatgaaataacttgctcaagttagatgcttaaatatgtattttgattttcattttagaccgtatataaataaatt 11410651  T
Q  436 aatatataggtagaggtgtcggtgtcc 462  Q
    || ||||| |||| |||||||||||||    
T  11410650 aacatatatgtagcggtgtcggtgtcc 11410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 25092132 - 25092208
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaa 85  Q
    ||||| ||||||| ||||| || | ||||||||||||| |||||| ||||||||| | ||| |||||||||||||||    
T  25092132 agcacggacacctctaggactaggtgtgtcgcagtgtctgacacttctatgacactcgtacaacacgtgtcggacaa 25092208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 29697116 - 29697008
Alignment:
Q  239 gagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattg 338  Q
    ||||||||||| ||||  |||| ||||| |||||||| ||||||  ||||  ||||  |||| |||||| | ||| ||||||||||  |||||| |||||    
T  29697116 gagaaatgttgttcaaggaggggttatagacattaaaattgattctaacatttttagcttttacgatagcagatgtataaataaagctcaaataatattg 29697017  T
Q  339 tatcttgtt 347  Q
    |||||||||    
T  29697016 tatcttgtt 29697008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 32594018 - 32593896
Alignment:
Q  209 acacacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagt 308  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||  |||  |  ||||||||||| ||||||||||||||||||||||||| || |||    
T  32594018 acacacagtagattcaagagttaaagatgtgagaaatgttgatcaatgaggagt--taaacattaaa-ttgattacaacacatttaaattttttgagagt 32593922  T
Q  309 acatggataaataaagggcaaatact 334  Q
    | |||||||||||||||  |||||||    
T  32593921 agatggataaataaaggctaaatact 32593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 478
Target Start/End: Complemental strand, 32593819 - 32593718
Alignment:
Q  377 taagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 476  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||| |||||| |||||| |||||| | | |||||||||    
T  32593819 taagttagatgcatatgtgtgtattttgattcataatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatggtttttacat 32593720  T
Q  477 ta 478  Q
    ||    
T  32593719 ta 32593718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 517
Target Start/End: Complemental strand, 54305633 - 54305542
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    |||||||||||| ||||| |||| ||||||||||||| |   ||||||||||| |  |||||| |||||||||||| ||| |||||||||||    
T  54305633 taaataaattaacatatatgtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtgtccgtgtcagtgttgtgtcaggtgt 54305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 513
Target Start/End: Complemental strand, 55680714 - 55680627
Alignment:
Q  426 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 513  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| |||||||| ||| |||||||||||    
T  55680714 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtatcagtgtcgtgtcag 55680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 40289207 - 40289277
Alignment:
Q  297 tttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttttctaatgaa 367  Q
    ||||| ||||||| ||| ||||||||||| ||||||||||  ||||||||| || | ||||||||||||||    
T  40289207 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgaa 40289277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 45612436 - 45612530
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaata 332  Q
    |||||||||||||| ||  |||||||||| |||||| ||||||||| | ||  ||||  ||||| ||||||| ||| ||||||||||| ||||||    
T  45612436 tgagaaatgttgattaataagggtttatagacattatagttgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaata 45612530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 517
Target Start/End: Original strand, 658632 - 658697
Alignment:
Q  452 tgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 517  Q
    ||||||||||| || |||||||||||| |||||| || || ||||||||| ||||||||| |||||    
T  658632 tgtcggtgtcctagattttttacattagcagtgttgacgtatccgtgtcagtgtcgtgtcgggtgt 658697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 54306023 - 54305958
Alignment:
Q  15 gacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||||| ||||| || ||||||| | |||||||||||| ||||||||| | ||||||||||||||    
T  54306023 gacacctctaggactaggcgtgtcacggtgtccgacactcctatgacacccgtacgacacgtgtcg 54305958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 238 - 493
Target Start/End: Complemental strand, 13045 - 12788
Alignment:
Q  238 tgagaaatgttgatcaactagg-gtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||| ||||||||| |||| | ||||| | |||||||||||||||||    ||||  ||||| ||||||| ||| ||||||||| | |||||||||     
T  13045 tgagaaacgttgatcaattaggaggttatagaaattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaatactag 12946  T
Q  337 tgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaatt 435  Q
       |||||||| |  | ||||||   ||||| |||  |||| |||||| || | |||||||||||||||| | | | |||||  ||| ||||||||||||    
T  12945 gacatcttgttttcgaacttttttcgatgaaataaattgctcaagttaaattcttatgtttgtattttgattttcattttaggccttctgtaaataaatt 12846  T
Q  436 aatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgt 493  Q
    |||||||| |||| |||||||||||||    |||||||||||| |||||||| |||||    
T  12845 aatatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgtcggtgtgt 12788  T

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