View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3919_low_25 (Length: 202)
Name: NF3919_low_25
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 30698824 - 30698981
Alignment:
| Q |
18 |
caaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaagagaatattagtaggatcttgttgcaacatttccaaatctgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698824 |
caaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaagagaatattagtaggatcttgttgcaacatttccaaatctgg |
30698923 |
T |
|
| Q |
118 |
gttattgaagtaagagctagtcatcatatgcattaggaagaaagaggtttctgtttag |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30698924 |
gttattgaagtaagagctactcatcatatgcattaggaagaaagtggtttctgtttag |
30698981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 30718978 - 30719112
Alignment:
| Q |
18 |
caaccatgtcaaaggaaagataatcatgaatattagggtcatgatgaaatggttcaaagagaatattagtaggatcttgttgcaacatttccaaatctgg |
117 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
30718978 |
caaccatgtaaaaagaaagataatcatgaatataagggtcttgatgaaatggttcaaacagaatattagtaagatcttgctgcaacatttccaaatctgg |
30719077 |
T |
|
| Q |
118 |
gttattgaagtaagagctagtcatcatatgcatta |
152 |
Q |
| |
|
||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
30719078 |
gttatggaaaaaagagctactcatcgtatgcatta |
30719112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University