View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_low_7 (Length: 425)
Name: NF3919_low_7
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 31502760 - 31503178
Alignment:
| Q |
1 |
agactttatgcggtatagacatgtaccaccttatattgatatattattggagaaattaggtttgattgggcagaaacatgtataggaatactgaatcaat |
100 |
Q |
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||||||||| |||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502760 |
agactttatacggtgtagacatgtcccatcctatattgatatattattggagaaattaggtttgattgggcagaaacatgtataggaatactgaatcaat |
31502859 |
T |
|
| Q |
101 |
gatgaaggagagatgggactttgattcctctatctagggttcagtagttggaccactttgaacactgctattcccttcaccc-actcacatggaatctct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31502860 |
gatgaaggagagatgggactttgattcctctatctagggttcagtagttggaccactttgaacactgctattcccttcaccccactcacatggaatctct |
31502959 |
T |
|
| Q |
200 |
gattcttttatgtatgtatcaatgtataattggttcttcgtatatgttccttctattttttatttatatgtttggatgggtatcttttaagccaggtacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31502960 |
gattcttttatgtatgtatcaatgtataattggttcatcggatatgttccttctattttttatttatatgtttggatgggtaacttttaagccaggtacg |
31503059 |
T |
|
| Q |
300 |
gttggtattaaattttttccttttgctaccaaattcattagccatgtgttacataatctagattcaaggcagcttctcatatcattgtaaatcaaactct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503060 |
gttggtattaaattttttccttttgctaccaaattcattagccatgtgttacataatctagattcaaggcagcttctcatatcattgtaaatcaaactct |
31503159 |
T |
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| Q |
400 |
acctttgaccgggtctgtg |
418 |
Q |
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| T |
31503160 |
acctttgaccgggtctgtg |
31503178 |
T |
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Back To:
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Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 29276218 - 29276020
Alignment:
| Q |
1 |
agactttatgcggtatagacatgtaccaccttatattgatatattattggagaaattaggtttgattgggcagaaacatgtataggaatactgaatcaat |
100 |
Q |
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||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29276218 |
agactttatacggtatagacatgtcccatcttatattgatatattattggagaaattgggtgtgattgggcagaaacatgtataggaatactgaatcaat |
29276119 |
T |
|
| Q |
101 |
gatgaaggagagatgggactttgattcctctatctagggttcagtagttggaccactttgaacactgctattcccttcacccactcacatggaatctct |
199 |
Q |
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||||||||||||||| ||||||| ||| ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29276118 |
gatgaaggagagatgtgactttggttcatctgtctatggttcagcagttggaccactttgaacactgctattcccctcacccactcacatggaatctct |
29276020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 55858374 - 55858572
Alignment:
| Q |
1 |
agactttatgcggtatagacatgtaccaccttatattgatatattattggagaaattaggtttgattgggcagaaacatgtataggaatactgaatcaat |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55858374 |
agactttatacggtatagacatgtcccatcttatattgatatattattgaagaaattgggtgtgattgggcagaaacatgtataggaatactgaatcaat |
55858473 |
T |
|
| Q |
101 |
gatgaaggagagatgggactttgattcctctatctagggttcagtagttggaccactttgaacactgctattcccttcacccactcacatggaatctct |
199 |
Q |
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||||||||||||||| ||||||| ||| ||| |||| |||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
55858474 |
gatgaaggagagatgtgactttggttcatctgtctatggttaagcagttggaccactttgaacactgctattcccctcacctactcacatggaatctct |
55858572 |
T |
|
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