View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3919_low_8 (Length: 423)
Name: NF3919_low_8
Description: NF3919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3919_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 423
Target Start/End: Original strand, 42623425 - 42623839
Alignment:
| Q |
9 |
agcagagaagaagtcggggcatggtaattcgtctttagaggcgccgcgacaaatggcagcccaagtagtttggaagagactgccggaacaaccgtcgagg |
108 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42623425 |
agcagaaaagaagtcggggcatggtaattcatctttagaggtgccgcgacaaatggcagcccaaatagtttggaagagactgccggaacaaccgtcgagg |
42623524 |
T |
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| Q |
109 |
agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623525 |
agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca |
42623624 |
T |
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| Q |
209 |
tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623625 |
tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat |
42623724 |
T |
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| Q |
309 |
agcaccttcatcattgcaagtgataaaggtgtgatcatttcttctgcctgcaacagggtagaaaatggttaatgtttctgaaagtgaattttttaattga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623725 |
agcaccttcatcattgcaagtgataaaggtgtgatcatttcttctgcctgcaacagggtagaaaatggttaatgtttctgaaagtgaattttttaattga |
42623824 |
T |
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| Q |
409 |
gcaatgaaatgggag |
423 |
Q |
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| T |
42623825 |
gcaatgaaatgggag |
42623839 |
T |
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