View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3920_high_1 (Length: 634)
Name: NF3920_high_1
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3920_high_1 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 2 - 615
Target Start/End: Complemental strand, 186657 - 186046
Alignment:
| Q |
2 |
ggatgtcgaagaatatagacacctgcaatgttaaagaatgtgatgattgatttaatcagtgaaatcattgtaagaaaacaataatatttcatacagtnnn |
101 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186657 |
ggatgtcaaagaatatagacacctgcaatgttaaagaatgtgatgattgatttaatcagtgaaatcattgtaagaaaacaataatatttcatacagtaaa |
186558 |
T |
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| Q |
102 |
nnnnnttcataaatgtgaaataatgatacactgttacataccaaggatagcaatagtttccctatgtttccatagaagttcatccaagaacctgaaaaac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186557 |
aaaaattcataaatgtgaaataatgatacactgttacataccaaggatagcaatagtttccctatgtttccatagaagttcatccaagaacctgaaaaac |
186458 |
T |
|
| Q |
202 |
aaagatgcaattttaaaatcatgtttcttcaaagtataaatttaaagaagatagattatagttatagatgatattagtgaccttgatcaatggattgcat |
301 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186457 |
aaagatggaattttaaaatcatgtttcttcaaagtataaatttaaagaagatagattatagttatagatgatattagtgaccttgatcaatggattgcat |
186358 |
T |
|
| Q |
302 |
agccatttgtgcatagtttgctacccctccagaaaagtctagcagaatgttccaaatgctccatccatcagtactttttctcataaagttcatcaccgcc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186357 |
agccatttgtgcatagtttgctacccctccagaaaagtctagcagaatgttccaaatgctccatccatcagtactttttctcataaagttcatcaccgcc |
186258 |
T |
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| Q |
402 |
tattttcgcaacagaaattattaagatggatggcttaacttcagaacaaaaaatggagcattctttgtatgttttaaacgacaatgagttcgacaaaatc |
501 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186257 |
tattttcgcaacagaaattattaagatggatggc-taacttcagaacaaaaaatggagcattctttgtatgttttaaacgacaatgagttcgacaaaatc |
186159 |
T |
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| Q |
502 |
actgtggtttcatctgattttgtgaagcttcaaagtgtagtatttgcaaaatttacatgttcaccgtaattctgcaaaactcaatgtcaatctaaacatg |
601 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186158 |
acggtgg-ttcatctgattttgtgaagcttcaaagtgtagtatttgcaaaatttacatgttcaccgtaattctgcaaaactcaatgtcaatctaaacatg |
186060 |
T |
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| Q |
602 |
cattgcgttctaat |
615 |
Q |
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| T |
186059 |
cgttgcgttctaat |
186046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 189504 - 189602
Alignment:
| Q |
281 |
accttgatcaatggattgcatagccatttgtgcatagtttgctacccctccagaaaagtctagcagaatgttccaaatgctccatccatcagtactttt |
379 |
Q |
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||||||||| | ||||||| | |||| ||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
189504 |
accttgatctactgattgcacaaccatctgtccatagtttgctattcctccagaaaagtctagtagaatgttcccaatgctccatccatcagtactttt |
189602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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