View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3920_high_3 (Length: 376)
Name: NF3920_high_3
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3920_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 41864945 - 41864597
Alignment:
| Q |
18 |
cttgtatgggtaaattggtgggtttagaagactcggcttgagttgcatgtatgagtatttccataacagctgttacaatgaccatgaaaagcactgcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41864945 |
cttgtatgggtaaattggtgggtttagaagactcggcttgagttgcatgtatgagtatttccataacagctgttacaatgaccataaaaagcactgcaaa |
41864846 |
T |
|
| Q |
118 |
gaagatgccatgccacgtggagagtagtttagtccgctgaaagaattttactagaagaaagcaaaggaaacttgaccaacaagccataacctgcagtagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41864845 |
gaagatgccatgccacgtggagagtagtttagtccactgaaagaattttactagaagaaagcaaaggaaacttgaccaacaagccataacctgcagtagt |
41864746 |
T |
|
| Q |
218 |
tcaattgaaatgaaaatttattatgaatagaacgattg---ttaaatagataacgaataaagtgattataaataataagtttaatctatctatcataatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41864745 |
tcaattgaaatgaaaatttattatgaatagaacgattgttattaaatagataacgaataaagtgattataaataataagtttaatctatctatcataatc |
41864646 |
T |
|
| Q |
315 |
caactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41864645 |
caactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
41864597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University