View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3920_high_4 (Length: 236)

Name: NF3920_high_4
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3920_high_4
NF3920_high_4
[»] chr5 (17 HSPs)
chr5 (1-220)||(11048995-11049214)
chr5 (3-220)||(10217089-10217306)
chr5 (3-153)||(10717280-10717430)
chr5 (3-153)||(10604471-10604621)
chr5 (5-220)||(10741041-10741256)
chr5 (3-216)||(10564683-10564896)
chr5 (3-220)||(10763473-10763690)
chr5 (3-133)||(10747355-10747485)
chr5 (3-153)||(19606205-19606355)
chr5 (3-140)||(10611442-10611579)
chr5 (3-220)||(10580643-10580860)
chr5 (33-140)||(10588800-10588907)
chr5 (3-145)||(10558629-10558771)
chr5 (6-108)||(9836671-9836773)
chr5 (7-103)||(10652546-10652642)
chr5 (170-220)||(10747522-10747572)
chr5 (7-104)||(10660429-10660526)
[»] chr6 (5 HSPs)
chr6 (6-220)||(12948296-12948510)
chr6 (6-220)||(12957730-12957944)
chr6 (11-220)||(12899222-12899431)
chr6 (6-220)||(12906842-12907056)
chr6 (11-219)||(12931932-12932140)
[»] chr2 (1 HSPs)
chr2 (6-220)||(17923746-17923960)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11048995 - 11049214
Alignment:
Q  1 ccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11048995 ccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatga 11049094  T
Q  101 aactttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataaga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||    
T  11049095 aactttatctagttgatcaattgttggtgaatcaaaagatggtttttggtttctttttttcatccaggtgataattataataaatgaaagtatgataaga 11049194  T
Q  201 aaagaaaccacactaactat 220  Q
    ||||||||||||||||||||    
T  11049195 aaagaaaccacactaactat 11049214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 10217089 - 10217306
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||| || || |||||| |||| |||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||    
T  10217089 gacacaagattcccgctatacacacaaccaaaacttcctgatccaatcaagtttttatccgagaacccatcagttccttgatgtaagtcttggtatgaaa 10217188  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaa 202  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||       |||||| |||||||||||||| ||||||||||||||||||||    
T  10217189 ctttagctagttgatcgattgttggtgaatcaaaagatggattttggtttctttttttcatccaagtgataattataataaatgaaagtatgataagaaa 10217288  T
Q  203 agaaaccacactaactat 220  Q
    ||||||||||||||||||    
T  10217289 agaaaccacactaactat 10217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 10717280 - 10717430
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | |||||||| |||||||||||| | ||||| ||||| |||||||    
T  10717280 gacacaagatttcctttgtacacagaaccaaaacttcctgatccaatcaagtttctttctgagaacccatcggttcctcggtgtaagtcttgatatgaaa 10717379  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttc 153  Q
    | ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  10717380 ccttagctagttgatcaatagttggtgaatcaaaggatggtttttggtttc 10717430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 10604621 - 10604471
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||| ||||| |||||||||||||| ||||| || ||||||||||    
T  10604621 gacacaagatttcctctgtacacagaaccaaaacttcctaatccaatcaagtttctatccgagaacccatcggttccttggtgtaagtcatggtatgaaa 10604522  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttc 153  Q
    | ||| ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  10604521 ccttatctagttgatgaattgctggtgaatcaaaagatgggttttggtttc 10604471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 10741041 - 10741256
Alignment:
Q  5 cacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaact 104  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| ||||||||| | |||||||| |||||||||||| | ||||| ||||| ||||||||     
T  10741041 cacaagatttcctttgtacacagaaccaaaacttcctgatccgatcaagtttctttctgagaacccatcggttcctcggtgtaagtcttgatatgaaacc 10741140  T
Q  105 ttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaag 204  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||       |||||||  ||||   ||||  |||||||||||||  |||||||    
T  10741141 ttagctagttgatcaatagttggtgaatcaaaggatgggttttggtttctcttcctcatccagcagatagaaataacaaatgaaagtatgagcagaaaag 10741240  T
Q  205 aaaccacactaactat 220  Q
    ||| ||| ||||||||    
T  10741241 aaatcacgctaactat 10741256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 10564896 - 10564683
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||| ||||||||  ||| |||| ||||||||| ||||||||| ||  |||||| |||||||||||||||||||| |||||||| ||||    
T  10564896 gacacaagatttcctttgtacacaagaccaaaacttcctgatcctatcaagtttctagttgagaacccatcggttccttgatgtaattcttggtacgaaa 10564797  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaa 202  Q
    | |||| ||||||||||| ||||||||||||| ||||| | ||| | ||||       |||||||  |||| |||| || ||||||||||||| ||||||    
T  10564796 ccttagatagttgatcaactgttggtgaatcacaagatcgctttggatttcttttcctcatccagtagatagttatgataaatgaaagtatgagaagaaa 10564697  T
Q  203 agaaaccacactaa 216  Q
    ||||||||||||||    
T  10564696 agaaaccacactaa 10564683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 10763473 - 10763690
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||||||||||||  |||  ||| ||||||||| |||| ||||||||| ||||| ||||| ||||||||  |||| |||||||||||||    
T  10763473 gacacaagatttcctctgtacacatcaccagaacttcctgatccgatcaggtttttatccgagaacccatctgttccttggagtaactcttggtatgaaa 10763572  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaa 202  Q
    | ||| ||||||| |||||||||||||||||||||||| | ||| | ||||        || |||  |||| |||| || ||||||||||||| ||||||    
T  10763573 ccttatctagttgctcaattgttggtgaatcaaaagatcgctttggatttcttttccttatgcagtagatagttatgataaatgaaagtatgagaagaaa 10763672  T
Q  203 agaaaccacactaactat 220  Q
    ||||||||| ||||||||    
T  10763673 agaaaccacgctaactat 10763690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 10747355 - 10747485
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||| ||||||| ||||| |||| ||||||||| ||||||||| ||  |||||| || |  ||||| |||||||| |||||||||||||    
T  10747355 gacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgagaaaccgtttgttccatgatgtaagtcttggtatgaaa 10747454  T
Q  103 ctttagctagttgatcaattgttggtgaatc 133  Q
    || ||||||||||||||||||| ||||||||    
T  10747455 ctgtagctagttgatcaattgtaggtgaatc 10747485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 19606205 - 19606355
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    |||| |||||||||| | ||||| |||||||| ||||||||||||||||||||| |||| ||||| ||||||||| | |||| ||| |||||||| ||||    
T  19606205 gacataagatttcctttatacacggaaccgaagcctcctgatccaatcaagtttctatccgagaacccatcggttgcctgatataagtcttggtaggaaa 19606304  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttc 153  Q
    |  ||| || ||| |||||||||||||||||  |||||||||||| |||||    
T  19606305 ccataggtaattggtcaattgttggtgaatctgaagatggttttttgtttc 19606355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 10611579 - 10611442
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||||||||||||  ||| |||| ||||||||| ||||||||| |||||||||| |||||||||||||| | ||| ||| || ||||||    
T  10611579 gacacaagatttcctctgtacacatcaccaaaacttcctgatccgatcaagtttctatctgagaacccatcggttccttggtataagtctcggaatgaaa 10611480  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagat 140  Q
    | ||||||  ||||||| ||| ||||||||| ||||||    
T  10611479 ccttagcttcttgatcatttggtggtgaatcgaaagat 10611442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 10580860 - 10580643
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    ||||||||||||||| ||||||| ||||| |||| |||||| || |||| |||| |||| ||||| ||||| |||||||  ||||| |||| ||||||||    
T  10580860 gacacaagatttcctttgtacacggaaccaaaacttcctgacccgatcatgtttctatccgagaacccatcagttcctttgtgtaagtctttgtatgaaa 10580761  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaa 202  Q
    | ||| |||||||||| ||| |||  ||||| || |||| ||||| ||| |        |||||   ||||  |||||| ||||||||||||| ||||||    
T  10580760 ccttatctagttgatctattattgaagaatctaatgatgattttttgttccttttacttatccaatagatagctataataaatgaaagtatgagaagaaa 10580661  T
Q  203 agaaaccacactaactat 220  Q
    |||||||||||| |||||    
T  10580660 agaaaccacactgactat 10580643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 10588800 - 10588907
Alignment:
Q  33 aaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagctagttgatcaattgttggtgaat 132  Q
    |||| |||||||||||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||| ||| |||| || ||| |||| |||| ||    
T  10588800 aaacttcctgatccaatcaagtttccatctgagaatccatcagttccttgatgtagttcttggtatgaaaccttaactagctggtcagttgtaggtgtat 10588899  T
Q  133 caaaagat 140  Q
    || |||||    
T  10588900 cagaagat 10588907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 10558771 - 10558629
Alignment:
Q  3 gacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaa 102  Q
    |||| |||||||||| | ||||| ||||| || ||||||||||||||||||||| ||  |||||| ||||| ||| | ||||  || |||||||| ||||    
T  10558771 gacataagatttcctttatacaccgaaccaaagcctcctgatccaatcaagtttctagatgagaagccatcagttgcctgatacaagtcttggtaagaaa 10558672  T
Q  103 ctttagctagttgatcaattgttggtgaatcaaaagatggttt 145  Q
    |  |||| ||||| |||||| ||||||||||  ||||||||||    
T  10558671 ccatagcaagttggtcaattattggtgaatctgaagatggttt 10558629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 9836671 - 9836773
Alignment:
Q  6 acaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactt 105  Q
    |||| ||||||| |||| || | ||| |||| ||||||||||||||| ||| ||||||||||  |||| ||||| |||||||  |||||||||||||| |    
T  9836671 acaatatttcctttgtatacggtaccaaaacttcctgatccaatcaaatttctatctgagaactcatcagttccatgatgtagttcttggtatgaaacct 9836770  T
Q  106 tag 108  Q
    |||    
T  9836771 tag 9836773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 10652546 - 10652642
Alignment:
Q  7 caagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaac 103  Q
    ||||||||||| ||||||||||||| |||| |||| |||||| || |||| || | || |||||||| |||||||| || |  |||| |||||||||    
T  10652546 caagatttcctttgtacacagaaccaaaacttcctaatccaaccaggtttctagcagaaaatccatcagttccttggtgaaggtctttgtatgaaac 10652642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 10747522 - 10747572
Alignment:
Q  170 gataattataatgaatgaaagtatgataagaaaagaaaccacactaactat 220  Q
    |||| ||||||| ||||||||||||| ||||||| |||| |||||||||||    
T  10747522 gatagttataataaatgaaagtatgagaagaaaaaaaacaacactaactat 10747572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 10660429 - 10660526
Alignment:
Q  7 caagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaact 104  Q
    ||||||||||| |||| |||||||| ||||||||| ||||||  | |||| || | || |||||||| |||||||| || |  ||||| |||||||||    
T  10660429 caagatttcctttgtagacagaaccaaaacctcctaatccaacaaggtttctagcagaaaatccatcagttccttggtgaaggtcttgatatgaaact 10660526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 12948510 - 12948296
Alignment:
Q  6 acaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactt 105  Q
    |||| |||||||||||| || ||||| |||| ||||||||| ||||||||| ||||||||||||||| ||||||   |||||| |||||||||||||| |    
T  12948510 acaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatgggttccaacatgtaattcttggtatgaaacct 12948411  T
Q  106 tagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaaga 205  Q
    ||||||||||||||||||| |||||||||||||||   ||||| ||||       ||||  |  |||| |||| || ||||||||||||| || ||||||    
T  12948410 tagctagttgatcaattgtaggtgaatcaaaagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaaga 12948311  T
Q  206 aaccacactaactat 220  Q
    |||||||||||||||    
T  12948310 aaccacactaactat 12948296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 12957944 - 12957730
Alignment:
Q  6 acaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactt 105  Q
    |||| |||||||||||| || ||||| |||| ||||||||| ||||||||| ||||||||||||||| ||||||   |||||| |||||||||||||| |    
T  12957944 acaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccattggttccaacatgtaattcttggtatgaaacct 12957845  T
Q  106 tagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaaga 205  Q
    ||||||||||||||||||| |||||||||||||||   ||||| ||||       ||||  |  |||| |||| || ||||||||||||| || ||||||    
T  12957844 tagctagttgatcaattgtaggtgaatcaaaagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaaga 12957745  T
Q  206 aaccacactaactat 220  Q
    |||| ||||||||||    
T  12957744 aaccgcactaactat 12957730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 12899431 - 12899222
Alignment:
Q  11 atttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagct 110  Q
    |||||||||||| || ||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||   ||||| |||||||| ||||| ||||||    
T  12899431 atttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatcggttcctacgtgtaattcttggtacgaaaccttagct 12899332  T
Q  111 agttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaacca 210  Q
    ||||||||||||| ||||||||||||||||   ||||| |||        ||||  |  |||| |||| || ||||||||||||| || |||||||||||    
T  12899331 agttgatcaattgctggtgaatcaaaagatctcttttgatttattttactcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaacca 12899232  T
Q  211 cactaactat 220  Q
    ||||||||||    
T  12899231 cactaactat 12899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 12907056 - 12906842
Alignment:
Q  6 acaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactt 105  Q
    |||| ||||||| |||| || ||||| |||| ||||||||| |||| |||| |||| |||||| |||||||||||   ||||| |||||||||||||| |    
T  12907056 acaatatttcctttgtatacggaaccaaaacttcctgatccgatcatgtttctatccgagaattcatcggttcctacgtgtaattcttggtatgaaacct 12906957  T
Q  106 tagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaaga 205  Q
    |||||||||||||||||||||||||||||||||||   ||||| ||||       ||||  |  |||| |||| || ||||||||||||| || ||||||    
T  12906956 tagctagttgatcaattgttggtgaatcaaaagatctcttttgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaaga 12906857  T
Q  206 aaccacactaactat 220  Q
    |||||||||||||||    
T  12906856 aaccacactaactat 12906842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 12932140 - 12931932
Alignment:
Q  11 atttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactttagct 110  Q
    ||||||| |||| || ||||| |||| ||||||||| |||| |||| ||| ||||||||||||||||||   |||||| |||||||||||||| ||||||    
T  12932140 atttcctttgtaaacggaaccaaaacttcctgatccgatcatgtttctatttgagaatccatcggttccaacatgtaattcttggtatgaaaccttagct 12932041  T
Q  111 agttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaagaaacca 210  Q
    ||||||||||||||||||||||||||||||   || || ||||       ||||  |  |||| |||| || ||||||||||||| || |||||||||||    
T  12932040 agttgatcaattgttggtgaatcaaaagatctcttctgatttcttttcctcatcatgtagatagttatgataaatgaaagtatgagaataaaagaaacca 12931941  T
Q  211 cactaacta 219  Q
    |||||||||    
T  12931940 cactaacta 12931932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 17923746 - 17923960
Alignment:
Q  6 acaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttccttgatgtaaatcttggtatgaaactt 105  Q
    |||| |||||||||||| || ||||| |||| ||||||||| |||| |||| |||||||||||||||||||||||   ||||| |||||||||||||| |    
T  17923746 acaatatttcctctgtatacggaaccaaaacttcctgatccgatcatgtttctatctgagaatccatcggttcctacgtgtaattcttggtatgaaacct 17923845  T
Q  106 tagctagttgatcaattgttggtgaatcaaaagatggtttttggtttcnnnnnnncatccaggtgataattataatgaatgaaagtatgataagaaaaga 205  Q
    |||||||||||||||||||||||||||||||||||   ||||| ||||       ||||  |  |||| | || || ||||||||||||| || ||||||    
T  17923846 tagctagttgatcaattgttggtgaatcaaaagatctcttttgatttctcttcctcatcatgtagatagtgatgataaatgaaagtatgagaataaaaga 17923945  T
Q  206 aaccacactaactat 220  Q
    |||||||||||||||    
T  17923946 aaccacactaactat 17923960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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