View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3920_low_3 (Length: 499)
Name: NF3920_low_3
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3920_low_3 |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 4184719 - 4184331
Alignment:
| Q |
12 |
catcatcaacatctcttgttcattcaaattattgtcttaagtcatttaagtattactttaataaccattttccttaaagttcataagcatgttcgtaacg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4184719 |
catcatcaacatctcttgttcattcaaattattgtcttaagtcatttaagtattactttaataaccattttccttaaagttcataagcatgttcgtaacg |
4184620 |
T |
|
| Q |
112 |
cttggtccatcttgttacaacagttggatattgttaaaataatctatggagcaagagcaattgtagagttcaaatacaac----atattccagcatattc |
207 |
Q |
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| T |
4184619 |
cttggtccatcttgttacaacagttggatattgttaaaataatctttggagcaagagcaattgtagagttcaaatacaacatatatattccagcatattc |
4184520 |
T |
|
| Q |
208 |
agccaaagttgtcgacaaagccttaaagtaagtgtctccacagcttcatgaagaaccataagtattgtcttaagcttttccaag---agcgaaacgtcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
4184519 |
agccaaagttgtcgacaaagccttaaagtaagtgtctccacagcttcatgaagaaccataagtattgtcttaagcttttccaagagtagtgaaacgtcaa |
4184420 |
T |
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| Q |
305 |
gcttcgtggcctggaacttgccgatgaag---tcactagaaacagtcttgtctaacagcaccttcacagaagttgagagtgagcagagt |
390 |
Q |
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| T |
4184419 |
gcttcgtggcctggaacttgccgatgaagtactcactagaaacaatcttgtctaacagcaccttcacagaagttgagagtgagcagagt |
4184331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 412
Target Start/End: Complemental strand, 5965060 - 5964916
Alignment:
| Q |
268 |
agtattgtcttaagcttttccaagagcgaaacgtcaagcttcgtggcctggaacttgccgatgaagtcactagaaacagtcttgtctaacagcaccttca |
367 |
Q |
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| T |
5965060 |
agtattgtcttaagcttttccaagagtgaaacatcaagtttagtgctgtggaagttgtcgacgaactgactagaaacaatcttgtttaacaacaccttca |
5964961 |
T |
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| Q |
368 |
cagaagttgagagtgagcagagttgtagaaaagatttatcaacca |
412 |
Q |
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|||||| |||||||||| |||||||| | ||||| |||||||| |
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| T |
5964960 |
cagaagctgagagtgagacgagttgtataggagattcatcaacca |
5964916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 223 - 414
Target Start/End: Original strand, 5530 - 5724
Alignment:
| Q |
223 |
caaagccttaaagtaagtgtctccacagcttcatgaagaac---cataagtattgtcttaagcttttccaagagcgaaacgtcaagcttcgtggcctgga |
319 |
Q |
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||||||| ||||||||| | || ||||| ||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
5530 |
caaagcccgaaagtaagtatgtctacagcatcaagaagaacgggcacaagtattgtcttaagcttttccaagagtgaaacgtcaagcttcatggcctgga |
5629 |
T |
|
| Q |
320 |
acttgccgatgaagtcactagaaacagtcttgtctaacagcaccttcacagaagttgagagtgagcagagttgtagaaaagatttatcaaccaaa |
414 |
Q |
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| T |
5630 |
agttgccgatgaagtcactagaaacaatcttgtttaacagcagtgacacagaaattgagagtgagtagaattgtagagaagatttatcaaccaaa |
5724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 29251041 - 29251153
Alignment:
| Q |
12 |
catcatcaacatctcttgttcattcaaattattgtcttaagtcatttaagtattactttaataaccattttccttaaagttcataagcatgttcgtaacg |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||| ||| | |
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| T |
29251041 |
catcatcaacatctcttgttcatccaaattattgtcttaagtcatttaagtattcgtctaataaccattttcctttaagttcataagcatcttcataaag |
29251140 |
T |
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| Q |
112 |
cttggtccatctt |
124 |
Q |
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| T |
29251141 |
cttggtccatctt |
29251153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1301 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 514 - 566
Alignment:
| Q |
328 |
atgaagtcactagaaacagtcttgtctaacagcaccttcacagaagttgagag |
380 |
Q |
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||||| |||||||||||| |||||| ||||| ||| |||||| |||||||||| |
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| T |
514 |
atgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagag |
566 |
T |
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