View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3920_low_4 (Length: 376)
Name: NF3920_low_4
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3920_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 41864945 - 41864597
Alignment:
| Q |
18 |
cttgtatgggtaaattggtgggtttagaagactcggcttgagttgcatgtatgagtatttccataacagctgttacaatgaccatgaaaagcactgcaaa |
117 |
Q |
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| T |
41864945 |
cttgtatgggtaaattggtgggtttagaagactcggcttgagttgcatgtatgagtatttccataacagctgttacaatgaccataaaaagcactgcaaa |
41864846 |
T |
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| Q |
118 |
gaagatgccatgccacgtggagagtagtttagtccgctgaaagaattttactagaagaaagcaaaggaaacttgaccaacaagccataacctgcagtagt |
217 |
Q |
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| T |
41864845 |
gaagatgccatgccacgtggagagtagtttagtccactgaaagaattttactagaagaaagcaaaggaaacttgaccaacaagccataacctgcagtagt |
41864746 |
T |
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| Q |
218 |
tcaattgaaatgaaaatttattatgaatagaacgattg---ttaaatagataacgaataaagtgattataaataataagtttaatctatctatcataatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864745 |
tcaattgaaatgaaaatttattatgaatagaacgattgttattaaatagataacgaataaagtgattataaataataagtttaatctatctatcataatc |
41864646 |
T |
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| Q |
315 |
caactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
363 |
Q |
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| T |
41864645 |
caactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
41864597 |
T |
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