View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3920_low_5 (Length: 361)
Name: NF3920_low_5
Description: NF3920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3920_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 7108253 - 7108588
Alignment:
| Q |
8 |
agattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcgttttttaaaactctagaccttaacatctttgccc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7108253 |
agattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcattttttaaaactctagaccttaacatctttgccc |
7108352 |
T |
|
| Q |
108 |
gatccgtatcagaagacgccattctctcaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccctccctcctctaatg |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7108353 |
aatccgtatcagaagacgccattctcccaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccctccttcctctaatg |
7108452 |
T |
|
| Q |
208 |
gcttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaat |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7108453 |
gcttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctccaaatcttttaacaat |
7108552 |
T |
|
| Q |
308 |
gaaaatggcaaaccatataagaacaaattgtgtatc |
343 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
7108553 |
gaaaatagcaaagcatataaggacaaattgtgtatc |
7108588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University