View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3921_high_5 (Length: 439)
Name: NF3921_high_5
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 41777438 - 41777028
Alignment:
| Q |
12 |
atgaaatggtggctacatgtgaaaagtaacttggattgtgaaccaaattattcctgcaagactgagcttggttcattctatgctgaatttcttgatggaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777438 |
atgaaatggtggctacatgtgaaaagtaacttggattgtgaaccaaattattcctgcaagactgagcttggttcattctatgctgaatttcttgatggaa |
41777339 |
T |
|
| Q |
112 |
atgtcaagaatggagaagatcaatctatcattgactttgacgatctttcttatattggaagtgataatttatcggttgatcagccacatcatgtctctcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41777338 |
atgtcaagaatggagaagatcaatctatcattgactttgacgatctttcttatattggaagtgataatttatcggttgatcagcctcatcatgtctctcc |
41777239 |
T |
|
| Q |
212 |
tattacatgtatgaaagacaacaataatgctagaatgcgaaaaattgaggcttcattgaacaatgatttacattttactcccaagaagaaagatcagaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777238 |
tattacatgtatgaaagacaacaataatgctagaatgcgaaaaattgaggcttcattgaacaatgatttacattttactcccaagaagaaagatcagaag |
41777139 |
T |
|
| Q |
312 |
gacttgggattttcagatgttggttttttggactgtgatgtttccaatttcttggtctcagaaaaaacgtcatcacatttgatgggaaacgagaaacctg |
411 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777138 |
gacttcggattttcagatgttggttttttggactgtgatgtttccaatttcttggtctcagaaaaaacgtcatcacatttgatgggaaacgagaaacctg |
41777039 |
T |
|
| Q |
412 |
ggccttggtgg |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
41777038 |
ggccttggtgg |
41777028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University