View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_high_7 (Length: 358)
Name: NF3921_high_7
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 5176956 - 5176623
Alignment:
| Q |
18 |
atgaattaaaatacaaatggttatctaggagttgagtctaacggaatatactatactcttacaacatgatgagtaaaggtttagatttcatgttcctgtg |
117 |
Q |
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| T |
5176956 |
atgaattaaaatacaaattgttatctaggggttgagtctaacggaatatactatactcttacaagatgatgagtaaaggtttagatttcatgttcctgtg |
5176857 |
T |
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| Q |
118 |
aatgaacataattcagagtataaggacattgttatatgtaagaagggttcaaactccgaattctatatttcttcactttaaagggtgaagtttctagtcg |
217 |
Q |
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| T |
5176856 |
aatgaacataattcagagtatagggatattgttagatgtaagaagggttgaaactccgaattttatatttcttcattttaaagggtgaagtttttagtcg |
5176757 |
T |
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| Q |
218 |
ctagattatttgcggaaaaaag-aaaagattgaattttagacgtaagagataaccacatttaatgtgtgacgcacctcaaatatattacttcaaatgaaa |
316 |
Q |
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| T |
5176756 |
ctagattatttgcagaaaaaagaaaaagattgaattttagacataagagataaccacatttagtgtgtgatgcacctcaaatatattacttcaaataaaa |
5176657 |
T |
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| Q |
317 |
gaaatttgg-aaaaaatagtgttaatagtataat |
349 |
Q |
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||||| ||| ||||||||||||||||| |||||| |
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| T |
5176656 |
gaaatatggaaaaaaatagtgttaatattataat |
5176623 |
T |
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