View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3921_high_9 (Length: 324)

Name: NF3921_high_9
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3921_high_9
NF3921_high_9
[»] chr7 (3 HSPs)
chr7 (15-307)||(30482710-30483003)
chr7 (131-253)||(18010590-18010712)
chr7 (131-171)||(18019137-18019177)
[»] chr8 (1 HSPs)
chr8 (133-253)||(3022523-3022643)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 30483003 - 30482710
Alignment:
Q  15 agattgggctatcgagcacttattttcaggtgtgaacatgcatcttaatt----cttgaatttgattaatagtattagtatttggatcttcaaaaattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30483003 agattgggctatcgagcacttattttcaggtgtgaacatgcatcttaattaattcttgaatttgattaatagtattagtatttggatcttcaaaaattaa 30482904  T
Q  111 taatatcatgcattaatttatggcagtggtgatcatgatatgtgtgtaccatttactggaagtgaggcttggaccagatctttgggatacaaggttgtgg 210  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482903 ta---tcatgcattaatttatggcagtggtgatcatgatatgtgtgtaccatttactggaagtgaggcttggaccagatctttgggatacaaggttgtgg 30482807  T
Q  211 atgagtggaggtcatggatctccaatgaccaagttgctgggtatattaatttctctctcactctcacatatttcaatacctaccaaaaataattgct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482806 atgagtggaggtcatggatctccaatgaccaagttgctgggtacattaatttctctctcactctcacatatttcaatacctaccaaaaataattgct 30482710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 18010712 - 18010590
Alignment:
Q  131 tggcagtggtgatcatgatatgtgtgtaccatttactggaagtgaggcttggaccagatctttgggatacaaggttgtggatgagtggaggtcatggatc 230  Q
    |||||||||||||||||| |||||||| |||| |||||||| ||| |||||||| | |||  | ||||| ||| |||| ||||| |||||| | ||| |     
T  18010712 tggcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaaaatcaattggatataagattgttgatgaatggaggccttggtta 18010613  T
Q  231 tccaatgaccaagttgctgggta 253  Q
     ||||||| ||| ||||||||||    
T  18010612 accaatgatcaaattgctgggta 18010590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 18019177 - 18019137
Alignment:
Q  131 tggcagtggtgatcatgatatgtgtgtaccatttactggaa 171  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  18019177 tggcagtggtgatcatgatatgtgtgtcccatttactggaa 18019137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 3022643 - 3022523
Alignment:
Q  133 gcagtggtgatcatgatatgtgtgtaccatttactggaagtgaggcttggaccagatctttgggatacaaggttgtggatgagtggaggtcatggatctc 232  Q
    |||||||||||||||| |||||||| ||||||||||| ||| | || ||||| |||||  | ||||||||| |||| ||||| |||||| ||||| | ||    
T  3022643 gcagtggtgatcatgacatgtgtgttccatttactgggagtcaagcatggacgagatcaattggatacaagattgttgatgaatggaggccatggttatc 3022544  T
Q  233 caatgaccaagttgctgggta 253  Q
    |||||  ||||||| ||||||    
T  3022543 caatggtcaagttgttgggta 3022523  T

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