View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3921_low_11 (Length: 316)
Name: NF3921_low_11
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_11 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 31127534 - 31127831
Alignment:
| Q |
19 |
cccgtggatggtaaggaagcggcttctgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaa |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127534 |
cccgtggatggtaaggaagcggcttgtgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaa |
31127633 |
T |
|
| Q |
119 |
ggtccgagaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127634 |
ggtccgagaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagtcaagttgatgatggaaagtggagctttattgggatggatcc |
31127733 |
T |
|
| Q |
219 |
ttatagttatgcggtttttcaagctgggccgagggggtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggc |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
31127734 |
ttatagttatgcggtttttcaggctgggccaagggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggc |
31127831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 52 - 316
Target Start/End: Original strand, 31078249 - 31078513
Alignment:
| Q |
52 |
gttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctg |
151 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31078249 |
gttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcggagaaaatatggggacttgattgggctg |
31078348 |
T |
|
| Q |
152 |
agtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
251 |
Q |
| |
|
|||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078349 |
agtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
31078448 |
T |
|
| Q |
252 |
ggggtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggc |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078449 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggc |
31078513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 31132245 - 31132504
Alignment:
| Q |
22 |
gtggatggtaaggaagcggcttctgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggt |
121 |
Q |
| |
|
||||||| ||||||||| || | || || |||||||| |||||||| ||||||||||||||||||| || | |||||| |||||| ||||||||||| |
|
|
| T |
31132245 |
gtggatgctaaggaagcagcctacgatgatgttttgccagatggaacattagtgaagaaagggtggatagttgcgtatcatgtatatgttatgggaaggt |
31132344 |
T |
|
| Q |
122 |
ccgagaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatggaaagtggagctttattgggatggatcctta |
221 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| |||||||||| |||||||| | || ||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31132345 |
ctgagaaaatatggggatccgattgggctgagttttgacctgagaggtggttgagtcgagctgacgatggaaaatggagctttgttgggatggatcctta |
31132444 |
T |
|
| Q |
222 |
tagttatgcggtttttcaagctgggccgagggggtgtttaggaaaggaaatggcgttctt |
281 |
Q |
| |
|
|| |||| || ||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
31132445 |
tacttatccgatttttcaagctgggccgagggtgtgtttagggaaagaaatggcgttctt |
31132504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University