View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3921_low_13 (Length: 283)

Name: NF3921_low_13
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3921_low_13
NF3921_low_13
[»] scaffold0182 (2 HSPs)
scaffold0182 (189-273)||(1181-1265)
scaffold0182 (134-188)||(1099-1153)
[»] chr3 (6 HSPs)
chr3 (189-273)||(5882442-5882526)
chr3 (189-273)||(54943899-54943983)
chr3 (134-188)||(54943817-54943871)
chr3 (134-188)||(5882360-5882414)
chr3 (4-36)||(5882229-5882261)
chr3 (4-36)||(54943678-54943710)
[»] chr4 (2 HSPs)
chr4 (189-273)||(43945759-43945843)
chr4 (135-188)||(43945871-43945924)
[»] chr7 (3 HSPs)
chr7 (189-273)||(47931098-47931182)
chr7 (134-188)||(47931016-47931070)
chr7 (4-36)||(47930878-47930910)
[»] chr6 (3 HSPs)
chr6 (189-273)||(16858637-16858721)
chr6 (137-188)||(16858749-16858800)
chr6 (4-36)||(16858901-16858933)
[»] chr5 (2 HSPs)
chr5 (135-178)||(12831096-12831139)
chr5 (135-178)||(12863076-12863119)


Alignment Details
Target: scaffold0182 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 1181 - 1265
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  1181 cagtttccaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 1265  T

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Target: scaffold0182; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 1099 - 1153
Alignment:
Q  134 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1099 cacaactcaaaccctaaaaacattaaaaattttaaatcataaaatccttctaccc 1153  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 5882442 - 5882526
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5882442 cagtttccaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 5882526  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 54943899 - 54943983
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  54943899 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcgctgttattgtcgtagattgctctctg 54943983  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 54943817 - 54943871
Alignment:
Q  134 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54943817 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 54943871  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 5882360 - 5882414
Alignment:
Q  134 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5882360 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccgtctaccc 5882414  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 5882229 - 5882261
Alignment:
Q  4 gttccatcctaaaaagttagaatatattctatc 36  Q
    |||||||||||||||||||| ||||||||||||    
T  5882229 gttccatcctaaaaagttagcatatattctatc 5882261  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 54943678 - 54943710
Alignment:
Q  4 gttccatcctaaaaagttagaatatattctatc 36  Q
    |||||||||||||||||||| ||||||||||||    
T  54943678 gttccatcctaaaaagttagcatatattctatc 54943710  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 43945843 - 43945759
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  43945843 cagtttcaaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 43945759  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 43945924 - 43945871
Alignment:
Q  135 acaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  43945924 acaactcaaatcctaaaaacgttaaattttttaaatcataaaatccttctaccc 43945871  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 47931098 - 47931182
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  47931098 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcgctgttattgtcgtagattgctctctg 47931182  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 47931016 - 47931070
Alignment:
Q  134 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47931016 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 47931070  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 47930878 - 47930910
Alignment:
Q  4 gttccatcctaaaaagttagaatatattctatc 36  Q
    |||||||||||||||||||| ||||||||||||    
T  47930878 gttccatcctaaaaagttagcatatattctatc 47930910  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 16858721 - 16858637
Alignment:
Q  189 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 273  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  16858721 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgtaattgttgtagattgctctctg 16858637  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 16858800 - 16858749
Alignment:
Q  137 aactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 188  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16858800 aactcaaaccctaaaaacattaaatattttaaatcataaaatccttctaccc 16858749  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 16858933 - 16858901
Alignment:
Q  4 gttccatcctaaaaagttagaatatattctatc 36  Q
    |||||||||||||||||||| ||||||||||||    
T  16858933 gttccatcctaaaaagttagcatatattctatc 16858901  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 12831139 - 12831096
Alignment:
Q  135 acaactcaaaccctaaaaacattaaattttttaaatcataaaat 178  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  12831139 acaactcaaaccctaaaaacgttaaattttttaaatcataaaat 12831096  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 12863119 - 12863076
Alignment:
Q  135 acaactcaaaccctaaaaacattaaattttttaaatcataaaat 178  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  12863119 acaactcaaaccctaaaaacgttaaattttttaaatcataaaat 12863076  T

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