View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_low_14 (Length: 272)
Name: NF3921_low_14
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 34403025 - 34402893
Alignment:
| Q |
123 |
ttaagaggtaaattttggtgacacacacgtgtggtggtggtgccatgattaggagtagaaattctcaaattgggtcttctccttctggaggtggggccca |
222 |
Q |
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| T |
34403025 |
ttaagaggtaaattttggtgacacacacgtgtggtggtggtgccatgattaggagtagaaattctcaaattgggtcttctccttctggaggtggggccca |
34402926 |
T |
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| Q |
223 |
tgatatgaaaccaaggaggctttatcaagtttg |
255 |
Q |
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| T |
34402925 |
tgatatgaaaccaaggaggctttatcaagtttg |
34402893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34403148 - 34403091
Alignment:
| Q |
1 |
ttccattttggtgaaagaggatatataataataataattgaaggaaccccagaagaaa |
58 |
Q |
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| T |
34403148 |
ttccattttggtgaaagaggatatataataataataattgaaggaaccccagaagaaa |
34403091 |
T |
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