View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3921_low_16 (Length: 252)
Name: NF3921_low_16
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_16 |
 | |
|
| [»] chr5 (17 HSPs) |
| |
|
| [»] scaffold0692 (1 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10216694 - 10216941
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10216694 |
cactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
10216793 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216794 |
tgccgaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttcta-- |
10216891 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10216892 |
--agcttccatttttcatgtaataaaaaactagagctttaaattcttgacct |
10216941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 11048602 - 11048849
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048602 |
cactcacatgagcaaccatgtcgtcgttaagaagaacattacttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
11048701 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11048702 |
tgcagaagcaacatcgataatgatgtttaacctatcaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttcta-- |
11048799 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||||| |||| |
|
|
| T |
11048800 |
--agcttccatttttcatgtaatcaaaaactagtgctttaaattcttcacct |
11048849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 10605016 - 10604769
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || |
|
|
| T |
10605016 |
cactcacatgagcaaccatatcatcatcaagtaggacattgcttggctttagatcacaatgaatgactaattgctcacattcttgatgaagataatgcaa |
10604917 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||||||| | ||||||||| || || | |||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10604916 |
tgcagaagcaacatcaaaaatgatgttaaatcttttaccaaggtccaacgttgttggaggctctgcatttaaaatctcaggatgcaaccattgttcta-- |
10604819 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10604818 |
--agcttccatttttcatgtaatcaaaaactagagctttaaattcttgacct |
10604769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 10716888 - 10717122
Alignment:
| Q |
4 |
tcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgc |
103 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||||||||||| |
|
|
| T |
10716888 |
tcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttaagatcacaatgaatgattaattgttcacattcttggtgaagataatgtaatgc |
10716987 |
T |
|
| Q |
104 |
agaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagcta |
203 |
Q |
| |
|
|| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| | |
|
|
| T |
10716988 |
agtggcgacatcgatcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttcta----a |
10717083 |
T |
|
| Q |
204 |
gcttccatttttcatgtaataaaacactagagctttaaa |
242 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10717084 |
gcttccatttttcatgtaatcaaaaactagagctttaaa |
10717122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10740644 - 10740881
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||||||| |
|
|
| T |
10740644 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgttcacattcttggtgaagataatgtaa |
10740743 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||| || |||||| | ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10740744 |
tgcagtggcgacatcgttcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttcta-- |
10740841 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaa |
242 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
10740842 |
--agcttccatttttcatgtaatcaaaaacaagagctttaaa |
10740881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 10746963 - 10747197
Alignment:
| Q |
4 |
tcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgc |
103 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||| | ||||||||||||||||| || ||||||||||||| |
|
|
| T |
10746963 |
tcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttgagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgt |
10747062 |
T |
|
| Q |
104 |
agaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagcta |
203 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||| | |
|
|
| T |
10747063 |
tgaagcaacatcgataatgatgtttaatctgtggccaaggtctaacgtttttggatgctcttcatttaaaaactcaggatgcaaccattgttcta----a |
10747158 |
T |
|
| Q |
204 |
gcttccatttttcatgtaataaaacactagagctttaaa |
242 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
10747159 |
gcttccattttttatgtaataaaaaactagagctttaaa |
10747197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 10565291 - 10565044
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| | ||||| ||||||||| ||| ||||||||||| |
|
|
| T |
10565291 |
cactcacatgagcaaccatgtcatcgtcaagaaggatattgcttggctttagatcacaatgaatgaccaattcttcacattctctatgaagataatgtaa |
10565192 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||| ||| |||||||||| |||| | |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
10565191 |
tgcagaagcaacatcgataataatgtataatctatgagcaaagtccaatgttgttgggggttctgcatttaaaatctcaggatgcaaccattgatcta-- |
10565094 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||||||||||||||||||| |
|
|
| T |
10565093 |
--agcttccatttttcatgtactcaaaaaccagagctttaaattcttgacct |
10565044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 10611974 - 10611727
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| | ||| ||||||||||| |
|
|
| T |
10611974 |
cactcacatgtgcaaccatatcatcatcaagtaggacattgcttggctttatatcacaatgaaggaccaattgctcacattcattatgaagataatgtaa |
10611875 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||||||| |||||||||||| || ||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
10611874 |
tgcagaaccaacatccataatgatgtttaatctatgactgaggtccaatgttgctgtatgctcttcatttaaaaccttgggatgcaaccattgttcta-- |
10611777 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
10611776 |
--agcttccatttttcatgtaatcaaaaactagggctttaaattcttgacct |
10611727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10763078 - 10763325
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||| |
|
|
| T |
10763078 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaa |
10763177 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||||||| |||||||| || | || ||| |||| ||||||||| ||||| ||||| ||||||| || ||| |||| |||| |||||| |
|
|
| T |
10763178 |
tgcagaagcaacatcaataatgatattcagtctttgatcaagatccaatgttgttggagtctctgcatttaaattcctagggtgcagccatcgttcta-- |
10763275 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
10763276 |
--agcttccatttttcatgtaatcaaaaaccagagctttaaattcttgacct |
10763325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 248
Target Start/End: Complemental strand, 10581228 - 10581025
Alignment:
| Q |
40 |
tgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgacc |
139 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10581228 |
tgcttggctttagatcacaacgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatgatgtttaatctatgacc |
10581129 |
T |
|
| Q |
140 |
aaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagcttt |
239 |
Q |
| |
|
||||| ||||||| || || | |||| | || |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10581128 |
aaggttcaatgttgttagaggttctgcactt-aaatctgaggatgcaaccattgttcta----agcttccatttttcatgtaataaaaaactaaagcttt |
10581034 |
T |
|
| Q |
240 |
aaattcttg |
248 |
Q |
| |
|
||||||||| |
|
|
| T |
10581033 |
aaattcttg |
10581025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10588375 - 10588622
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| | || ||||||||||| ||||| |||||||||| |
|
|
| T |
10588375 |
cactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttggctttatatcacaatgaaggaccacctgctcacattcatgatgaagataatgtag |
10588474 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||| ||||||| |||| ||||| |||||| |||||||||| ||| |||||||||||||||| | | || ||||| | ||||||||||| |
|
|
| T |
10588475 |
tgcagaagcaatatcgatagtgatatttaatctatgaacaaggtccaacgttcttggatgctctgaattcacattccatggatgaagccattgttcta-- |
10588572 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
| ||||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
10588573 |
--aacttccatttttcatgtaatcaaaaactaaagctttaaattcttgacct |
10588622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 10559166 - 10558919
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||| |
|
|
| T |
10559166 |
cactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaa |
10559067 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||||||| |||||||| || | || ||| ||| ||||||| | |||| |||||| ||| | ||| | ||||||||| | ||||| |
|
|
| T |
10559066 |
tgcagaagcaacatcaataatgatattcagtctttgattaagatccaatgctcttggttgctctacattcatcatccttgaatgcaaccagttttcta-- |
10558969 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||| ||||| |||||| |
|
|
| T |
10558968 |
--agcttccatttttcatgtattcaaaaactagagctttgaattcctgacct |
10558919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 19605842 - 19606057
Alignment:
| Q |
33 |
aggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| || |||||||||||||||| |||||||| || ||| ||||| | |
|
|
| T |
19605842 |
aggacattgcttggctttagatcacaatgaaggaccaattgctcacattcatgatgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatc |
19605941 |
T |
|
| Q |
133 |
tatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacacta |
232 |
Q |
| |
|
| || ||| | ||||||| ||||||| |||| ||| | || | ||||||||||||||||||| ||||||||||| ||||||| | ||| |||| |
|
|
| T |
19605942 |
tttgctcaaacttcaatgttcttggatgatctgcattcattgtcccgggatgcaaccattgttcta----agcttccatttctcatgtactcaaaaacta |
19606037 |
T |
|
| Q |
233 |
gagctttaaattcttgacct |
252 |
Q |
| |
|
||||||| |||||| ||||| |
|
|
| T |
19606038 |
gagctttgaattctagacct |
19606057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7193269 - 7193169
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| || |||||||| |
|
|
| T |
7193269 |
cactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggctttagatcacaatgaatgatcgattgctcacattcaagatgaaggtaatgtaa |
7193170 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
7193169 |
t |
7193169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10652147 - 10652257
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || |||||||| |
|
|
| T |
10652147 |
cactcacatgagcaaccatgtcgtcatcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcatgatgaaggtaatgtaa |
10652246 |
T |
|
| Q |
101 |
tgcagaagcaa |
111 |
Q |
| |
|
| ||||||||| |
|
|
| T |
10652247 |
tacagaagcaa |
10652257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10660030 - 10660130
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || |||||||| |
|
|
| T |
10660030 |
cactcacatgagcaaccatgtcatcgtcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcgtgatgaaggtaatgtaa |
10660129 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
10660130 |
t |
10660130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9836273 - 9836514
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
||||||| ||||||||||||| || ||| || |||| ||||||||||| | |||||||||||| | || |||||||||||| ||| ||||||||||| |
|
|
| T |
9836273 |
cactcacgtgagcaaccatgttatcatcgagaaggatgttgcttggcttgatatcacaatgaatgaccacttgctcacattcacaatgaagataatgtaa |
9836372 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
||||||||||| ||| || ||| |||| || ||| |||||| ||||||| | |||| |||||||| | || |||| | ||||||||||| |
|
|
| T |
9836373 |
tgcagaagcaatatcaatggagatatttagtctttgaacaaggttcaatgttctaggatactctgaatccactgtccagggataaagccattgttcta-- |
9836470 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattct |
246 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
9836471 |
--agcttccatttttcatgtaatcaaaaactaaagctttaaattct |
9836514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 7557 - 7310
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||| || |||||||| |
|
|
| T |
7557 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaagtattaattgctcacattctcgatgaagttaatgtaa |
7458 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
7457 |
tgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttattggaggatttgcattcaaagtctcaggatgtaaccactgttcta-- |
7360 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
7359 |
--agcttccatttttcatgtattcaaaaactagagctttaaattcttgacct |
7310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12899834 - 12899587
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
12899834 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttatatcacaatgaaagactaattgctcacattctcgatgaagataatgtaa |
12899735 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||| ||||| ||||||||||||| |
|
|
| T |
12899734 |
tgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcgggatgtaaccattgttcta-- |
12899637 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
12899636 |
--agcttccatttttcatgtattcaaaaactagagctttaaattcttgacct |
12899587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12932543 - 12932296
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| || || |||||||||||| |||| || ||||| || |
|
|
| T |
12932543 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaa |
12932444 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
12932443 |
tgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta-- |
12932346 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||||||||||||||||| |
|
|
| T |
12932345 |
--agcttccatttttcatgtattcaaaaactagtgctttaaattcttgacct |
12932296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 12948908 - 12948665
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| | ||||||||||||| | |||| ||||||||||| |
|
|
| T |
12948908 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggactaattgctcacattatcgatgaagataatgtaa |
12948809 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
12948808 |
tgcagaagcaacatcgataatgatgtttaatctacgacgaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta-- |
12948711 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttg |
248 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
12948710 |
--agcttccatttttcatgtattcaaaaactagagctttaaattcttg |
12948665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12907454 - 12907207
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| | || || |||||||||||| |||| ||||||||||| |
|
|
| T |
12907454 |
cactcaaatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatggaggattaactgctcacattctcgatgaagataatgtaa |
12907355 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||| | | || ||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
12907354 |
tgcagaagcaacatcgatgatgatgtttaatctaagaccaaggttcaatgttgttggaggatttgcattcaaagtttcaggatgtaaccactgttcta-- |
12907257 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
12907256 |
--agcttccatttttcatgtattcaaaaactagagctttaaattcttgacct |
12907207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12958342 - 12958095
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| || || |||||||||||| |||| ||||||||||| |
|
|
| T |
12958342 |
cactcacatgagcaaccatgtcaccatcaagaaggacattgcttggctttagatcacagtgaaggattaactgctcacattctcgatgaagataatgtaa |
12958243 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatg-ctctgaatttaaaatctcaggatgcaaccattgttctaa |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | ||| | ||| ||||| | |||||| ||||| ||||||| |
|
|
| T |
12958242 |
tgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggactc-gcattcaaaatttgaggatgtaaccactgttcta- |
12958145 |
T |
|
| Q |
200 |
gctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
|||||||||||| |||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
12958144 |
---agcttccattttccatgtattcaaaaactagagctttaaattcttgacct |
12958095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 17923348 - 17923595
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| || || |||||||||||| |||| || ||||| || |
|
|
| T |
17923348 |
cactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaa |
17923447 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
17923448 |
tgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta-- |
17923545 |
T |
|
| Q |
201 |
ctagcttccatttttcatgtaataaaacactagagctttaaattcttgacct |
252 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
17923546 |
--agcttccatttttcatgtattcaaaaactagagctttaaattcttgacct |
17923595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28605887 - 28605824
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaat |
64 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || | |||||||||||||| |||||||||||| |
|
|
| T |
28605887 |
cactcacatgagcaaccatgtcattatgaagaagaatattgcttggctttaaatcacaatgaat |
28605824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39875837 - 39875899
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaa |
63 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
39875837 |
cactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39875899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39883960 - 39884022
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaa |
63 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
39883960 |
cactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39884022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39890914 - 39890976
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaa |
63 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
39890914 |
cactcacatgagcaaccatgtcatcttcaagaaggacattgcttggttttaaatcacaatgaa |
39890976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31467107 - 31467239
Alignment:
| Q |
1 |
cactcacatgagcaaccatgtcattatcaagtaggacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaa |
100 |
Q |
| |
|
||||||||||||| ||||| || |||||| || || ||||| ||||||| |||||||||||| | ||||| |||||| ||||| |||||||| || |
|
|
| T |
31467107 |
cactcacatgagctaccatagaatcatcaagaagaacgttgctaggctttaaatcacaatgaatgacaggttgctgacattcatgatgaagataatgaaa |
31467206 |
T |
|
| Q |
101 |
tgcagaagcaacatcgataatgatgtttaacct |
133 |
Q |
| |
|
||| |||||||| || ||||| || |||||||| |
|
|
| T |
31467207 |
tgccgaagcaacgtcaataataatatttaacct |
31467239 |
T |
|
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 24662262 - 24662214
Alignment:
| Q |
15 |
accatgtcattatcaagtaggacattgcttggctttagatcacaatgaa |
63 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24662262 |
accatatcattgtcaagtagtacattgcttggctttatgtcacaatgaa |
24662214 |
T |
|
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