View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_low_18 (Length: 245)
Name: NF3921_low_18
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31127832 - 31128073
Alignment:
| Q |
1 |
agtttagggtggttcctgcaatggataaaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaa |
100 |
Q |
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| T |
31127832 |
agtttagggtggttcctgcaatggataaaggggttgagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaa |
31127931 |
T |
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| Q |
101 |
gcgtggcagcacaaatgaatgaaatcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127932 |
gcgtggcagcacaaatgaatgaaatcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaat |
31128031 |
T |
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| Q |
201 |
tatgacttttattatttaatggaaattatttcaatctgtgct |
242 |
Q |
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| T |
31128032 |
tatgacttttattatttaatggaaattatatcaatctgtgct |
31128073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31078514 - 31078616
Alignment:
| Q |
1 |
agtttagggtggttcctgcaatggataaaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| || | ||||||||||||||| |||||| |||||||| |
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| T |
31078514 |
agtttagggtggttcctgcaatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaaaggtggcttctcggtaagaattgagaa |
31078613 |
T |
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| Q |
101 |
gcg |
103 |
Q |
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||| |
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| T |
31078614 |
gcg |
31078616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31132543 - 31132645
Alignment:
| Q |
1 |
agtttagggtggttcctgcaatggataaaggggttgagccagagttcgctgcacaccttacttcgataatgaaaggtggcttcccggtaaagattgagaa |
100 |
Q |
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|||||||| || |||| || |||||| |||||||||| |||| ||| | | |||| |||||||| || |||||||||||||| ||||||||||| |||| |
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| T |
31132543 |
agtttaggttgcttccagcgatggatgaaggggttgaaccagtgtttgattcacatcttacttcaattatgaaaggtggctttccggtaaagatcaagaa |
31132642 |
T |
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| Q |
101 |
gcg |
103 |
Q |
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||| |
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| T |
31132643 |
gcg |
31132645 |
T |
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