View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_low_20 (Length: 205)
Name: NF3921_low_20
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 46038221 - 46038040
Alignment:
| Q |
18 |
aatattccaagataatttgaccttaatgaagttttactaactatttaaattcaaccatttagttagatttttagatcaaagtatgcttgagttgtgtaag |
117 |
Q |
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| T |
46038221 |
aatattccaagataatttgatcttaatgaagttttactaactatttaaattcaaccatttagttagatttttacatcaaagtatgcttgagttgtgtaag |
46038122 |
T |
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| Q |
118 |
tttggtgtggatttctaggaggaacttaacagcggttataaaatcaaatttgagtttcttacaatcttgtcattgatgatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46038121 |
tttggtgtggatttctaggaggaacttaacagcggttataaaatcaaatttgagtttcttacaatcttgtcattgaagatgt |
46038040 |
T |
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