View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3921_low_3 (Length: 464)

Name: NF3921_low_3
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3921_low_3
NF3921_low_3
[»] chr2 (36 HSPs)
chr2 (18-456)||(43808299-43808737)
chr2 (220-309)||(33267572-33267661)
chr2 (212-295)||(11307229-11307312)
chr2 (220-295)||(18962108-18962183)
chr2 (220-295)||(9478224-9478299)
chr2 (220-295)||(17952771-17952846)
chr2 (225-295)||(28902007-28902077)
chr2 (192-289)||(15171147-15171244)
chr2 (220-292)||(3102618-3102690)
chr2 (220-308)||(14209202-14209290)
chr2 (340-405)||(43456649-43456714)
chr2 (211-295)||(29430672-29430755)
chr2 (211-251)||(44606202-44606242)
chr2 (249-299)||(3458610-3458661)
chr2 (189-295)||(28803576-28803682)
chr2 (340-399)||(29430821-29430880)
chr2 (343-385)||(1625967-1626009)
chr2 (211-292)||(3423841-3423922)
chr2 (223-280)||(5998787-5998844)
chr2 (220-293)||(37053519-37053592)
chr2 (223-261)||(42826314-42826352)
chr2 (262-295)||(1160814-1160847)
chr2 (337-374)||(18525210-18525247)
chr2 (263-308)||(19243577-19243622)
chr2 (220-300)||(34339048-34339128)
chr2 (234-295)||(40722547-40722606)
chr2 (220-253)||(44458450-44458483)
chr2 (340-397)||(44606060-44606117)
chr2 (340-380)||(1741999-1742039)
chr2 (222-293)||(3673734-3673805)
chr2 (251-295)||(5043630-5043674)
chr2 (227-274)||(5045248-5045295)
chr2 (222-250)||(13864577-13864605)
chr2 (263-295)||(31740029-31740061)
chr2 (263-295)||(37292417-37292449)
chr2 (210-250)||(43965245-43965285)
[»] chr5 (30 HSPs)
chr5 (210-295)||(35135732-35135817)
chr5 (220-295)||(32059659-32059733)
chr5 (225-309)||(32197657-32197741)
chr5 (195-292)||(20982208-20982305)
chr5 (192-250)||(26516195-26516253)
chr5 (220-309)||(11684348-11684435)
chr5 (220-288)||(29014681-29014749)
chr5 (220-295)||(36539671-36539746)
chr5 (222-293)||(37063146-37063217)
chr5 (226-293)||(41277422-41277490)
chr5 (210-261)||(4991048-4991098)
chr5 (354-405)||(7550460-7550511)
chr5 (345-380)||(8090004-8090039)
chr5 (340-394)||(11297149-11297203)
chr5 (347-397)||(12407680-12407730)
chr5 (220-286)||(29365544-29365609)
chr5 (338-388)||(37611174-37611224)
chr5 (338-388)||(37787904-37787954)
chr5 (220-292)||(6733966-6734037)
chr5 (221-289)||(7096203-7096271)
chr5 (192-261)||(33961600-33961668)
chr5 (338-411)||(40534260-40534333)
chr5 (338-398)||(4619768-4619828)
chr5 (190-250)||(6738522-6738582)
chr5 (263-295)||(8158371-8158403)
chr5 (226-278)||(8571302-8571353)
chr5 (340-380)||(10152397-10152437)
chr5 (338-370)||(11406255-11406287)
chr5 (341-385)||(12242672-12242716)
chr5 (340-380)||(14980572-14980612)
[»] chr1 (29 HSPs)
chr1 (220-293)||(45107548-45107620)
chr1 (231-295)||(48830146-48830210)
chr1 (344-399)||(4033965-4034020)
chr1 (212-293)||(30815707-30815789)
chr1 (228-293)||(1232964-1233029)
chr1 (212-296)||(870962-871046)
chr1 (342-395)||(16980868-16980921)
chr1 (228-284)||(1730825-1730881)
chr1 (215-286)||(48282053-48282125)
chr1 (340-387)||(49692012-49692059)
chr1 (220-274)||(3244829-3244883)
chr1 (210-295)||(4200144-4200229)
chr1 (339-397)||(4757400-4757458)
chr1 (343-385)||(6557039-6557081)
chr1 (220-285)||(33339500-33339565)
chr1 (340-397)||(38867783-38867838)
chr1 (195-261)||(46504322-46504387)
chr1 (214-295)||(52286597-52286678)
chr1 (208-295)||(4256112-4256200)
chr1 (340-377)||(6262801-6262838)
chr1 (356-393)||(7707269-7707306)
chr1 (220-295)||(28467377-28467454)
chr1 (339-380)||(28467495-28467536)
chr1 (340-397)||(34536221-34536278)
chr1 (226-258)||(7357455-7357487)
chr1 (263-295)||(9656618-9656650)
chr1 (228-295)||(15360827-15360894)
chr1 (192-295)||(17420100-17420203)
chr1 (210-305)||(23895251-23895346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (220-294)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (220-294)||(2756-2830)
[»] chr4 (32 HSPs)
chr4 (192-298)||(22684583-22684689)
chr4 (192-293)||(54414846-54414950)
chr4 (220-287)||(28581988-28582054)
chr4 (192-274)||(8422928-8423010)
chr4 (345-399)||(18628501-18628555)
chr4 (340-394)||(27123305-27123359)
chr4 (340-397)||(2996636-2996693)
chr4 (210-295)||(44319865-44319949)
chr4 (234-293)||(437504-437564)
chr4 (210-293)||(24193500-24193583)
chr4 (340-379)||(27725277-27725316)
chr4 (342-397)||(33534119-33534174)
chr4 (226-292)||(42321952-42322018)
chr4 (220-295)||(54325107-54325182)
chr4 (220-295)||(55437356-55437429)
chr4 (220-274)||(32920491-32920543)
chr4 (222-287)||(47970245-47970310)
chr4 (338-387)||(1554968-1555017)
chr4 (223-295)||(4071811-4071882)
chr4 (263-292)||(5219573-5219602)
chr4 (220-293)||(23819015-23819087)
chr4 (220-292)||(36734818-36734890)
chr4 (215-295)||(49219059-49219139)
chr4 (345-378)||(52428733-52428766)
chr4 (221-274)||(54986348-54986400)
chr4 (253-289)||(12162911-12162947)
chr4 (220-295)||(21157693-21157768)
chr4 (192-295)||(30024597-30024700)
chr4 (222-294)||(32724046-32724118)
chr4 (218-250)||(52645623-52645655)
chr4 (192-244)||(55599063-55599115)
chr4 (331-387)||(56007734-56007789)
[»] chr8 (24 HSPs)
chr8 (340-398)||(21130675-21130733)
chr8 (211-295)||(34788497-34788581)
chr8 (212-293)||(2699223-2699304)
chr8 (210-295)||(28769409-28769494)
chr8 (227-291)||(4558730-4558794)
chr8 (220-293)||(10722556-10722629)
chr8 (234-309)||(26215435-26215510)
chr8 (227-278)||(2595084-2595134)
chr8 (241-295)||(42237492-42237547)
chr8 (340-394)||(9700064-9700118)
chr8 (340-394)||(14949929-14949983)
chr8 (220-294)||(26717182-26717254)
chr8 (192-250)||(31875674-31875732)
chr8 (195-295)||(3645886-3645986)
chr8 (211-295)||(11056737-11056821)
chr8 (345-378)||(27412851-27412884)
chr8 (222-297)||(29262942-29263016)
chr8 (338-387)||(30191101-30191150)
chr8 (220-252)||(6918956-6918988)
chr8 (355-411)||(10923674-10923730)
chr8 (339-399)||(11376765-11376825)
chr8 (220-252)||(11952478-11952510)
chr8 (343-395)||(31915245-31915297)
chr8 (220-299)||(40357824-40357903)
[»] chr7 (26 HSPs)
chr7 (212-295)||(40428471-40428555)
chr7 (220-295)||(49060465-49060540)
chr7 (340-399)||(3500913-3500974)
chr7 (339-405)||(22387838-22387904)
chr7 (342-376)||(31149705-31149739)
chr7 (342-376)||(31167997-31168031)
chr7 (220-293)||(45593791-45593864)
chr7 (192-295)||(26935620-26935723)
chr7 (210-250)||(27389298-27389338)
chr7 (220-295)||(36370595-36370669)
chr7 (355-399)||(44151424-44151468)
chr7 (220-268)||(45078218-45078265)
chr7 (220-290)||(47004012-47004082)
chr7 (192-250)||(28844383-28844441)
chr7 (340-385)||(44808221-44808266)
chr7 (210-250)||(1431423-1431463)
chr7 (339-387)||(8094368-8094416)
chr7 (220-295)||(22759111-22759186)
chr7 (224-295)||(27481364-27481435)
chr7 (210-246)||(27517969-27518005)
chr7 (213-292)||(30496622-30496701)
chr7 (210-293)||(31341109-31341192)
chr7 (214-293)||(35536026-35536105)
chr7 (338-394)||(36537969-36538025)
chr7 (220-295)||(39551618-39551693)
chr7 (263-295)||(40689056-40689088)
[»] chr6 (28 HSPs)
chr6 (228-310)||(2034494-2034575)
chr6 (210-295)||(7351678-7351763)
chr6 (222-296)||(32513752-32513825)
chr6 (220-295)||(10452430-10452505)
chr6 (340-387)||(1669758-1669805)
chr6 (211-293)||(3217262-3217344)
chr6 (338-385)||(20368142-20368189)
chr6 (340-394)||(2460104-2460158)
chr6 (192-250)||(32975875-32975933)
chr6 (263-295)||(1402964-1402996)
chr6 (220-295)||(10032496-10032571)
chr6 (338-394)||(27693392-27693448)
chr6 (192-294)||(9833168-9833270)
chr6 (210-277)||(24332858-24332924)
chr6 (340-399)||(32577934-32577993)
chr6 (210-295)||(22742281-22742366)
chr6 (223-261)||(30817671-30817709)
chr6 (340-394)||(30863309-30863363)
chr6 (341-395)||(30865547-30865601)
chr6 (192-250)||(33068676-33068734)
chr6 (222-297)||(27693507-27693581)
chr6 (342-399)||(27857423-27857480)
chr6 (340-393)||(32917260-32917313)
chr6 (224-280)||(33911366-33911422)
chr6 (249-292)||(2027479-2027523)
chr6 (220-288)||(8010282-8010349)
chr6 (249-292)||(28660833-28660877)
chr6 (350-394)||(31668430-31668474)
[»] chr3 (30 HSPs)
chr3 (339-387)||(2175809-2175857)
chr3 (218-293)||(25459696-25459770)
chr3 (220-289)||(16790432-16790501)
chr3 (342-387)||(25182947-25182992)
chr3 (220-295)||(25183058-25183134)
chr3 (210-251)||(28842971-28843012)
chr3 (220-291)||(38462206-38462277)
chr3 (220-252)||(49772781-49772813)
chr3 (340-387)||(1810040-1810087)
chr3 (211-293)||(22232742-22232824)
chr3 (213-295)||(28779274-28779356)
chr3 (220-295)||(32703063-32703138)
chr3 (341-380)||(40880915-40880954)
chr3 (350-397)||(47584523-47584570)
chr3 (339-394)||(50015948-50016003)
chr3 (192-289)||(12985399-12985497)
chr3 (338-380)||(21574551-21574593)
chr3 (346-384)||(47132063-47132101)
chr3 (338-411)||(50004713-50004787)
chr3 (235-295)||(1395611-1395671)
chr3 (342-387)||(14548681-14548726)
chr3 (192-292)||(33965564-33965665)
chr3 (338-394)||(2304224-2304280)
chr3 (210-274)||(9279417-9279481)
chr3 (240-295)||(37689454-37689509)
chr3 (220-295)||(41028921-41028996)
chr3 (236-299)||(42809242-42809305)
chr3 (220-295)||(43116498-43116573)
chr3 (206-289)||(44284134-44284217)
chr3 (347-387)||(50211805-50211845)
[»] scaffold0153 (2 HSPs)
scaffold0153 (263-295)||(6568-6600)
scaffold0153 (263-295)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (234-309)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 43808299 - 43808737
Alignment:
Q  18 acaaccctcttcaggtttgtctactggattttagatcactttactttgtttttgtgcattcacttggtagtaagtaagtagtgaacataaagtgattttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43808299 acaaccctcttcaggtttgtctactggattttagatcactttactttgtttttgtgcattcactttgtagtaagtaagtagtgaacataaagtgattttt 43808398  T
Q  118 atatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaatagtttaattaagtgttgataccataagcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  43808399 atatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaatagtttaattaagtgtttatagcataagcg 43808498  T
Q  218 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808499 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctg 43808598  T
Q  318 aaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808599 aaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaa 43808698  T
Q  418 catgttctcattataagttcactttaagtctcctttgct 456  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43808699 catgttctcattataagttcactttaagtctcctttgct 43808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 33267661 - 33267572
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataagctgtttctataagcta 309  Q
    ||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttct-ataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 11307229 - 11307312
Alignment:
Q  212 taagcgcgtatcatataagtgtttatgtataagctattttttat-aacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||| |||||| |||||||||||||| |||||    
T  11307229 taagcgcttatcataaaagtgtt-atgtataagctatttttttttaacaaagataaagtaaagtcaaactattttcataaaagct 11307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 18962183 - 18962108
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||| |||||| |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  18962183 tatcatgtaagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 9478224 - 9478299
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||||||||||||||| ||| |||||||  | |||||||||| | ||| ||||||||||||||||    
T  9478224 tatcatataagtgtttatgtataagcta-tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 17952846 - 17952771
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||| | |||| |||||||||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  17952846 tatcatataagagcttatatataagctatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 28902007 - 28902077
Alignment:
Q  225 tataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 295  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||| ||||||| ||||||||||||||    
T  28902007 tataagtgcttatgtataagcta-tttttataacataagttaaaataaaattaaactgttttcatataagct 28902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 15171147 - 15171244
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcata 289  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||||| | |||| ||||||| || ||||| |||||| ||| | ||||||||    
T  15171147 ttaattaagtgtttatagcataagctcgtattttataagtgtttatgtataag-ttttttctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 3102618 - 3102690
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 292  Q
    |||||||||| || |||||||||||||| |||||||| | ||| |||||||||||| |||||||||| ||||||    
T  3102618 tatcatataactgcttatgtataagcta-tttttatagcaaaatataaaataaagtcaaactatttttatataa 3102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 14209202 - 14209290
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagct 308  Q
    |||||||||||||||| ||| ||||||||||   ||||||||  |||||||||| | ||||| |||||||||||||| |||| |||||||    
T  14209202 tatcatataagtgtttctgtctaagctatttca-ataacaaaagataaaataaattcaaactgttttcatataagctatttccataagct 14209290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 405  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 29430672 - 29430755
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||  ||||||| ||| |||||||||||||||| ||| |||||||||  | ||||||||| ||||| ||||| ||||||||    
T  29430672 ataagcgtttatcatacaagggtttatgtataagcta-tttctataacaaaagttaaataaagtcaaactgttttcttataagct 29430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 44606242 - 44606202
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctatttt 251  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  44606242 ataagcgcttattatataagtgtttatgtataagctatttt 44606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 3458610 - 3458661
Alignment:
Q  249 tttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 299  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||||||    
T  3458610 tttttataacaaaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 28803682 - 28803576
Alignment:
Q  189 agtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 287  Q
    |||||||||||||||| ||  |||||  || ||||||||||||| |||| |||||| || |||  ||||| ||| |||||||||||| |||||  |||||    
T  28803682 agtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagtta-tttcgataacaaaagataaaataaagtcaaactgatttca 28803584  T
Q  288 tataagct 295  Q
    ||||||||    
T  28803583 tataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
T  29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
Q  343 tgtcataagttattttcataagctctctcaaatagtcttacaa 385  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 3423922 - 3423841
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataa 292  Q
    ||||| || ||||||| ||||||||||||||||| |||||||  || ||||  |||||||||||| ||| |||||||||||||    
T  3423922 ataagtgcttatcatacaagtgtttatgtataagttatttttg-taccaaaagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 5998844 - 5998787
Alignment:
Q  223 catataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 280  Q
    ||||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  5998844 catataattgtttatatataagctat-ttttataacaaaagataaaataaagttaaact 5998787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 37053519 - 37053592
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 293  Q
    ||||||||||||| |||||||||  |||||| | |||||| || |||||||||||| ||||| ||||||||||||    
T  37053519 tatcatataagtgcttatgtatagactatttct-ataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 42826314 - 42826352
Alignment:
Q  223 catataagtgtttatgtataagctattttttataacaaa 261  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  42826314 catataagtgcttatatataagctattttttataacaaa 42826352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 1160847 - 1160814
Alignment:
Q  262 cataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| ||||||||||||||||||||    
T  1160847 cataaaataaagtcaaactattttcatataagct 1160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
Q  337 cgaacatgtcataagttattttcataagctctctcaaa 374  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 19243577 - 19243622
Alignment:
Q  263 ataaaataaagttaaactattttcatataagctgtttctataagct 308  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||    
T  19243577 ataaaataaatttaaattgttttgatataagctgtttctataagct 19243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 34339048 - 34339128
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttc 300  Q
    ||||||||||||| |||||||||| || |||| |||| | ||| |||||||||||| | ||| ||||| |||||||||||||    
T  34339048 tatcatataagtgcttatgtataaact-ttttctatagctaaagataaaataaagtcagactgttttcgtataagctgtttc 34339128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 40722606 - 40722547
Alignment:
Q  234 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||| ||||||| |||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  40722606 ttatgcataagct-ttttttataacaaa-ataaaataaagtcgaactgttttcatataagct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 44458483 - 44458450
Alignment:
Q  220 tatcatataagtgtttatgtataagctatttttt 253  Q
    |||||||||||| |||||||||||||||||||||    
T  44458483 tatcatataagtatttatgtataagctatttttt 44458450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
T  44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtct 380  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 293  Q
    ||||||||||| |||||||| || ||||| | ||||||||  |||||||||||||||| | ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttatttct-ataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 5043674 - 5043630
Alignment:
Q  251 tttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||    
T  5043674 tttataagaaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 5045295 - 5045248
Alignment:
Q  227 taagtgtttatgtataagctattttttataac-aaacataaaataaagt 274  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  5045295 taagtgtttatgtataagctat-ttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 13864577 - 13864605
Alignment:
Q  222 tcatataagtgtttatgtataagctattt 250  Q
    |||||||||||||||||||||||||||||    
T  13864577 tcatataagtgtttatgtataagctattt 13864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 31740061 - 31740029
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| ||||||||||||||||||||    
T  31740061 ataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 37292449 - 37292417
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| ||||||||||||||||||||    
T  37292449 ataaaataaagtaaaactattttcatataagct 37292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 43965285 - 43965245
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  43965285 cataagcacttatcatataagtgtttatgaataagctattt 43965245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 35135817 - 35135732
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||| || || |||||||||||||||||||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  35135817 cataagtgcttaacatataagtgtttatgtataagatatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 32059733 - 32059659
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| ||||||||||||| |||||  |||| || |||||||||||| ||||| ||||||||||||||    
T  32059733 tatcatataagtgcttatgtataagctgtttttg-taactaagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 32197657 - 32197741
Alignment:
Q  225 tataagtgtttatgtataagctattttttataacaaacataaa-ataaagttaaactattttcatataagctgtttctataagcta 309  Q
    |||||||||||| |||||| |||||| || ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||    
T  32197657 tataagtgtttacgtataaactatttatt-taacaaaaatttatataaagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 20982305 - 20982208
Alignment:
Q  195 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 292  Q
    |||||||| | ||| |||||| || ||||||||||||| |||||||||||||| ||| |||||||||  |||||||||||| || |  |||||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagcta-tttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 26516195 - 26516253
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| |||||||||||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctattt 26516253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 11684348 - 11684435
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagcta 309  Q
    ||||||||||||| | |||||||||||| ||||||||||||| ||| || | ||| ||||| |||||||||||||| |||  ||||||||    
T  11684348 tatcatataagtgctaatgtataagcta-tttttataacaaa-atataaaatagtgaaactgttttcatataagctattttcataagcta 11684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 29014681 - 29014749
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcat 288  Q
    ||||||||||||||| |||||||||||| ||||||| | |||| ||||||| |||| |||||||||||||    
T  29014681 tatcatataagtgttcatgtataagcta-tttttatgataaacgataaaatcaagtcaaactattttcat 29014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 36539671 - 36539746
Alignment:
Q  220 tatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| |||||| |||||||||| ||||| | ||| |||||||||||| || || ||||||||||||||    
T  36539671 tatcatataagtgcttatgtgtaagctatttgtttatca-aaagataaaataaagtcaacctgttttcatataagct 36539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 37063217 - 37063146
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 293  Q
    |||||||| || |||||||||| |||||| | ||||||||  |||||||||||| ||||||||||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttct-ataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 41277490 - 41277422
Alignment:
Q  226 ataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 293  Q
    ||||||| ||||||| ||||| |||||| ||| |||| |||||||||||| ||||| ||||||||||||    
T  41277490 ataagtgcttatgtaaaagcttttttttgtaatcaaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 4991098 - 4991048
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 261  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||||||    
T  4991098 cataagcgattatcatataagtgtttgtgtataagctat-ttttataacaaa 4991048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
Q  354 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 405  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 380
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
Q  345 tcataagttattttcataagctctctcaaatagtct 380  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
T  11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
Q  347 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 29365544 - 29365609
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttc 286  Q
    ||||||||||||| | |||||||||||| ||||||| | ||| |||| || ||||||||||||||||    
T  29365544 tatcatataagtgctcatgtataagcta-tttttatgataaaaataacatcaagttaaactattttc 29365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 388  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 388  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 6734037 - 6733966
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 292  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||| |||| | |||||||||||    
T  6734037 tatcatataagtgtttatgcataatcta-tttttataacgaaagataaaataaag-taaattgttttcatataa 6733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 7096271 - 7096203
Alignment:
Q  221 atcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 289  Q
    |||||| ||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||| |||||||||    
T  7096271 atcatacaagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 33961600 - 33961668
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 261  Q
    ||||||||||||| |||  |||||| | |||||||||||||||| |||||||| ||  ||||||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggta-cttttataacaaa 33961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 411  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
T  40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 398  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
T  4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 6738582 - 6738522
Alignment:
Q  190 gtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||||||| ||| ||| ||||| | | ||||||||||||  |||||||||||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctattt 6738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 8158403 - 8158371
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||| ||||||||||||||||    
T  8158403 ataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 8571302 - 8571353
Alignment:
Q  226 ataagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 278  Q
    ||||||||||||||||| | |||||| ||||||||| | ||||||||||||||    
T  8571302 ataagtgtttatgtatatgatatttt-tataacaaagaaaaaataaagttaaa 8571353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtct 380  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 370
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
Q  338 gaacatgtcataagttattttcataagctctct 370  Q
    |||||| ||||||||||||||||||||||||||    
T  11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
Q  341 catgtcataagttattttcataagctctctcaaatagtcttacaa 385  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtct 380  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 293  Q
    ||||||||||||| |||| |||||||||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttct-ataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 48830210 - 48830146
Alignment:
Q  231 tgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||| ||||| |  || |||| |||||||||||| ||||||||||||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
Q  344 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 293
Target Start/End: Complemental strand, 30815789 - 30815707
Alignment:
Q  212 taagcgcgtatcatataagtg-tttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 293  Q
    ||||||| |||||||||| |  ||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  30815789 taagcgcttatcatataattactttatgtctaagct-ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 1233029 - 1232964
Alignment:
Q  228 aagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 293  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1233029 aagtgtttatgcataagctgttttt-ataacaaaacataaaataaagttaaattattttcgtataag 1232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 870962 - 871046
Alignment:
Q  212 taagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctg 296  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||||||| ||| ||||||| |||| ||  | |||||||||||||||    
T  870962 taagcgcttatcatataagtgcttatgtataaacta-tttttataacaaaagataaaattaagtcaattttttttcatataagctg 871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 395  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 1730825 - 1730881
Alignment:
Q  228 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattt 284  Q
    ||||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactattt 1730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 48282053 - 48282125
Alignment:
Q  215 gcgcgtatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttc 286  Q
    |||| ||||||||||||| ||||||| ||||||||| | || || ||| |||||||||||| |||||||||||    
T  48282053 gcgcttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 3244829 - 3244883
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 274  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  3244829 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 3244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 4200144 - 4200229
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| | |||||| ||||||||||| |||||| || |||||||||| ||| |||||||||||| ||  | ||||||||||||||    
T  4200144 cataagcacttatcatctaagtgtttatatataagtta-tttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
T  4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
Q  343 tgtcataagttattttcataagctctctcaaatagtcttacaa 385  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 33339565 - 33339500
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactatttt 285  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||||||    
T  33339565 tatcatataggtgtttatgtataagcta-tttctataccaaaagataaaatgaagttaaactatttt 33339500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
T  38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 46504387 - 46504322
Alignment:
Q  195 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 261  Q
    |||||||||| ||| ||||||| | |||||||||||||||| | ||||| ||| |||||||||||||    
T  46504387 attaagtgtttatagcataagctcttatcatataagtgtttgtctataaacta-tttttataacaaa 46504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 52286597 - 52286678
Alignment:
Q  214 agcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||| ||||||||||| | ||||| ||||| ||||| | | ||||||  ||||||||||||||||| |||||||||||||||    
T  52286597 agcgcttatcatataagcgcttatgaataagatatttct-acaacaaaagataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 4256200 - 4256112
Alignment:
Q  208 accataagcgcgtatcat-ataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||||| || |||||| ||| ||||||||||||||||||||| | | ||||||  ||| |||||||||||| ||||||| ||||||||    
T  4256200 accataagtgcttatcatgatacgtgtttatgtataagctatttct-acaacaaaagatacaataaagttaaattattttcgtataagct 4256112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatag 377  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
Q  356 tttcataagctctctcaaatagtcttacaagtatttat 393  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 28467454 - 28467377
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttt-tataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||| | ||| |||||||||| |||||| | |||||||||  |||||||||||| ||| ||||||||||||||||    
T  28467454 tatcatacaggtgattatgtataacctatttgtgtataacaaaagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtct 380  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 7357455 - 7357487
Alignment:
Q  226 ataagtgtttatgtataagctattttttataac 258  Q
    ||||| |||||||||||||||||||||||||||    
T  7357455 ataagcgtttatgtataagctattttttataac 7357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 9656618 - 9656650
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||| ||||||||||||||||    
T  9656618 ataaaataaagttaaattattttcatataagct 9656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  228 aagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||| || ||||| | ||||||||  |||||||||||| ||||| ||||||||||||||    
T  15360827 aagtgtttatgtattagttatttct-ataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 17420100 - 17420203
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatat 290  Q
    ||||||||||| | |||  |||||||| || || ||||||  |||||||||| ||| |||||||||  ||| ||||||||||||  ||| ||||||||||    
T  17420100 ttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaacta-tttttataagaaaagataaaataaagtcgaacaattttcatat 17420198  T
Q  291 aagct 295  Q
    |||||    
T  17420199 aagct 17420203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 23895251 - 23895346
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttctataa 305  Q
    ||||||| | ||||||||||||  |||||||||||||| ||| |||||| ||| |||||||||| | ||||| || ||||||| ||| ||| |||||    
T  23895251 cataagcccttatcatataagttattatgtataagcta-tttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataa 23895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 1219 - 1145
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 294  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  1219 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 2756 - 2830
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 294  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  2756 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 22684689 - 22684583
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 290  Q
    |||||||| || | |||||||| |||| |||||||||| || || ||||||||||| ||| ||||||||||  ||||||||||| ||| | |||||||||    
T  22684689 ttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagcta-tttctataacaaacggtaaaataaagtcaaattgttttcatat 22684591  T
Q  291 aagctgtt 298  Q
    ||||||||    
T  22684590 aagctgtt 22684583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 293
Target Start/End: Original strand, 54414846 - 54414950
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctat--tttttat-aacaaacataaaataaagttaaactattttcat 288  Q
    ||||||||||||| ||   |||||||| ||||||||||||| |||||||||||||||  ||||||| || ||| | |||||||||| || |||||||| |    
T  54414846 ttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagctattatttttataaagaaagagaaaataaagtcaatctattttcct 54414945  T
Q  289 ataag 293  Q
    |||||    
T  54414946 ataag 54414950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 28582054 - 28581988
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttca 287  Q
    ||||||| |||||||||||||||| ||||||||||  | ||| |||||||||||| ||||||||||||    
T  28582054 tatcatagaagtgtttatgtataaactattttttagca-aaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 8423010 - 8422928
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 274  Q
    ||||||||||||| ||| ||||| |  |||||||||| ||| |||||||||||||||||||   || ||| ||||||||||||    
T  8423010 ttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
Q  345 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
T  2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 44319865 - 44319949
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| | ||||||||||||| | |||||||| |||||| | |||| ||| ||||||||||||  |||| ||||||||||||||    
T  44319865 cataagcacttatcatataagtgctcatgtataaactatttct-ataaaaaagataaaataaagtcgaactgttttcatataagct 44319949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 437564 - 437504
Alignment:
Q  234 ttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 293  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| | | ||||||||||    
T  437564 ttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 24193500 - 24193583
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 293  Q
    ||||| ||| ||||||||||||  ||||||||||| || |||||| ||| ||| |||||| | ||||||||||||||||||||||    
T  24193500 cataaacgcttatcatataagtacttatgtataagtta-tttttacaacaaaatataaaacagagttaaactattttcatataag 24193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtc 379  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
T  33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 42322018 - 42321952
Alignment:
Q  226 ataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 292  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| | |||||||||||    
T  42322018 ataagtgtttatgaataagctat-ttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 54325182 - 54325107
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| || ||||||| |||||| |  ||  ||| |||||||||||| ||||| ||||||||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 55437429 - 55437356
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||| | |||| |||||||||||| | |||||||  |||||||||||| ||| ||||||||||||||||    
T  55437429 tatcatataagcgattatctataagctatttct-ataacaat-ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 32920543 - 32920491
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 274  Q
    ||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  32920543 tatcatataagtgtttatggataagctat-ttttataac-aagataaaataaagt 32920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 47970245 - 47970310
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 287  Q
    ||||||||||| |||||||||||||| ||| |||||| ||| ||||||| |||| ||||||||||||    
T  47970245 tcatataagtgcttatgtataagcta-tttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
T  1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 4071811 - 4071882
Alignment:
Q  223 catataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||||| ||||| |||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  4071811 catataagtgtttatatataa-ctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 5219602 - 5219573
Alignment:
Q  263 ataaaataaagttaaactattttcatataa 292  Q
    ||||||||||||||||||||||||||||||    
T  5219602 ataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 23819015 - 23819087
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 293  Q
    ||||||| ||||||||||||||||| || |||  |||||||| |||||||  ||| ||||| ||||||||||||    
T  23819015 tatcatacaagtgtttatgtataagtta-tttccataacaaatataaaatgtagtcaaactgttttcatataag 23819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 36734818 - 36734890
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataa 292  Q
    ||||||||||||| |||||||||| || ||| | ||||||||   ||||||||||| |||||||||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttct-ataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 49219059 - 49219139
Alignment:
Q  215 gcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||| |||||||| |||| ||| ||||||| ||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  49219059 gcgcttatcatatgagtggttaggtataagttatttct-ataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
Q  345 tcataagttattttcataagctctctcaaatagt 378  Q
    ||||||||| ||||||||||||||||||||||||    
T  52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 54986348 - 54986400
Alignment:
Q  221 atcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 274  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||    
T  54986348 atcatataagtttttatgtataagcta-tttctataacaaaaataagataaagt 54986400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12162911 - 12162947
Alignment:
Q  253 tataacaaacataaaataaagttaaactattttcata 289  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12162911 tataacaaacataaaataaagtcaaattattttcata 12162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 21157693 - 21157768
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||||| |||||| ||||| ||||||| ||||||    
T  21157693 tatcatataagtgcttatgtatcagcta-ttttgataacaaagtataaactaaagtcaaactgttttcatgtaagct 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 30024597 - 30024700
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 290  Q
    ||||||||||||| |||  | |||||  ||||||||||||  ||||| ||||| ||||| | ||||||||  |||||||||||| ||| | |||||||||    
T  30024597 ttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttct-ataacaaaagataaaataaagtaaaattgttttcatat 30024695  T
Q  291 aagct 295  Q
    |||||    
T  30024696 aagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 32724046 - 32724118
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 294  Q
    |||||| |||| |||||| ||| |||||| |  ||  ||| |||||||||||| |||||||||||||||||||    
T  32724046 tcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 52645623 - 52645655
Alignment:
Q  218 cgtatcatataagtgtttatgtataagctattt 250  Q
    |||||||||||||||||||||||| ||||||||    
T  52645623 cgtatcatataagtgtttatgtatgagctattt 52645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 55599063 - 55599115
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataag 244  Q
    |||||||||||   ||| ||||||||||||||| |||||||||||| ||||||    
T  55599063 ttaattaagtgcatatagcataagcgcgtatcacataagtgtttatatataag 55599115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
Q  331 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
T  56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 398  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 34788581 - 34788497
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||| |||||||||| || ||| |||||||||||||||   | |||| |||||||||||| ||||| ||| ||||||||||    
T  34788581 ataagcgcttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagct 34788497  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 2699223 - 2699304
Alignment:
Q  212 taagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 293  Q
    ||||||| ||||||||| |||| ||| |||||| ||||| | | ||||||  |||||||||||||||||||||||||||||||    
T  2699223 taagcgcctatcatatacgtgtctatatataagttatttct-acaacaaaatataaaataaagttaaactattttcatataag 2699304  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 28769494 - 28769409
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||| || |||||||||| || |||||||||||||| ||  |||||||||| ||||||| |||| ||||||||||| ||||||||    
T  28769494 cataagtgcttatcatataaatgcttatgtataagcta-ttcctataacaaactataaaattaagtcaaactattttcttataagct 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 4558730 - 4558794
Alignment:
Q  227 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatata 291  Q
    |||||||||||||||||||||||| | |||| |||  |||||||||||||||| ||||||||||||    
T  4558730 taagtgtttatgtataagctatttct-ataataaaagataaaataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 10722556 - 10722629
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 293  Q
    ||||||||||||| || ||||||| ||  ||| ||||||||| |||||||||| | ||| ||||||||||||||    
T  10722556 tatcatataagtgcttgtgtataatcttatttatataacaaagataaaataaactaaaattattttcatataag 10722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 26215435 - 26215510
Alignment:
Q  234 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 309  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||||| |||||  |||||  ||||||||    
T  26215435 ttatgtataagctatttct-ataacaaaagataaaataaagttaaactattttcgtataatatgttttcataagcta 26215510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 2595134 - 2595084
Alignment:
Q  227 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 278  Q
    |||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  2595134 taagtgtttatgtataaggttttttttataac-aagataaaataaagttaaa 2595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 42237547 - 42237492
Alignment:
Q  241 taagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
T  9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
T  14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 26717182 - 26717254
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 294  Q
    ||||||||||||| || || |||||||| |||| |||||||  |||||||||||| |||||||||||| ||||||    
T  26717182 tatcatataagtgcttctgaataagctaatttt-ataacaag-ataaaataaagtcaaactattttcaaataagc 26717254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 31875732 - 31875674
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||| ||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  31875732 ttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctataagctattt 31875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 3645986 - 3645886
Alignment:
Q  195 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 293  Q
    ||||| |||| ||| |||||| |  ||||||||||||| || ||||||||||| ||| |||||  ||| |||||| ||| | ||||||||||||||||||    
T  3645986 attaaatgtttatagcataagtgtttatcatataagtgcttgtgtataagcta-tttctataagaaaatataaaacaaaatcaaactattttcatataag 3645888  T
Q  294 ct 295  Q
    ||    
T  3645887 ct 3645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 11056821 - 11056737
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaa-taaagttaaactattttcatataagct 295  Q
    |||||| | ||||||||||||||| ||| || |||||||| | ||||||||   |||| ||||||| |||||||||||||||||||    
T  11056821 ataagctcttatcatataagtgttcatgcatgagctatttct-ataacaaaaggaaaaataaagttgaactattttcatataagct 11056737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
Q  345 tcataagttattttcataagctctctcaaatagt 378  Q
    ||||||||| ||||||||||||||||||||||||    
T  27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 29263016 - 29262942
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 297  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  29263016 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 6918956 - 6918988
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttt 252  Q
    ||||||||||||| |||||||||||||||||||    
T  6918956 tatcatataagtgcttatgtataagctattttt 6918988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
Q  355 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 411  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
T  11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 11952510 - 11952478
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttt 252  Q
    |||||||||||||||||||||||||| ||||||    
T  11952510 tatcatataagtgtttatgtataagccattttt 11952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
Q  343 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 395  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
T  31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 40357824 - 40357903
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgttt 299  Q
    |||||||||||| ||||||||||||||  ||  |||||| ||| |||||||||||| ||| |||||||||| | |||||||    
T  40357824 tatcatataagtatttatgtataagct-cttgatataacaaaagataaaataaagtaaaattattttcataaatgctgttt 40357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 40428471 - 40428555
Alignment:
Q  212 taagcgcgtatcatataagtgtttatgtataagctattttttataac--aaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| ||| ||||||||| ||||| |||||| ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||    
T  40428471 taagcgcctattatataagtgattatggataagc-attttctataacgaaaaaataaaataaagttaaattattttcatataagct 40428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 49060465 - 49060540
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||| |||||||||||| ||| |||||| |||||||||    
T  49060465 tatcatataagtatttatgtataagcta-tttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 399  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
T  3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 405  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaata 376  Q
    |||||||||||||||||||||||||||||||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaata 376  Q
    |||||||||||||||||||||||||||||||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 45593864 - 45593791
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 293  Q
    |||||||||| || ||||||||||||||||| |  ||||||| ||||||||||||| ||||| ||||||||||||    
T  45593864 tatcatataaatgcttatgtataagctatttctg-taacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 26935723 - 26935620
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatat 290  Q
    ||||||||| | | |||||||||| |  ||||||||||||| || ||| |||||||| ||||||||||||  ||||||||| |||||| | |||||||||    
T  26935723 ttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctat-ttttataacaaatgataaaataaggttaaattgttttcatat 26935625  T
Q  291 aagct 295  Q
     ||||    
T  26935624 gagct 26935620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 27389298 - 27389338
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  27389298 cataagtgcttatcatataagtgtttatgtataagctattt 27389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 36370595 - 36370669
Alignment:
Q  220 tatcatataagtgttt-atgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||| |||||| |||||||||||||||| |||||| || ||||||| |||||||||| |||||| |||||||    
T  36370595 tatcatatatgtgttttatgtataagctattttctataac-aagataaaat-aagttaaactgttttcacataagct 36370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
Q  355 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 45078218 - 45078265
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaa 268  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  45078218 tatcatataagtgcttatgtataagcta-tttttataacaaaaataaaa 45078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 47004012 - 47004082
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 290  Q
    |||||||||||||||||| | ||||||| ||| |||||||| | |||||||||||| |||||||||| ||||    
T  47004012 tatcatataagtgtttatatgtaagcta-tttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 28844383 - 28844441
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||||||||| ||| ||||||||| |||  |||||||| ||||||||||| |||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatattt 28844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaa 385  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 1431463 - 1431423
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  1431463 cataagtgcttatcatataagtgtttatgtataagttattt 1431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 22759111 - 22759186
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||| |||||||| ||||||| ||| |||||| ||| |||||||||||  ||| | ||||||||||||||    
T  22759111 tatcatataagcgtttatgtttaagcta-tttgtataacaaaagataaaataaaggaaaattgttttcatataagct 22759186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 27481435 - 27481364
Alignment:
Q  224 atataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||||||||||| ||| |||||||||  ||||||  |||| ||||| ||| ||||||||||    
T  27481435 atataagtgtttatgtataagcta-tttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 27518005 - 27517969
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagct 246  Q
    |||||| || |||||||||||||||||||||||||||    
T  27518005 cataagtgcttatcatataagtgtttatgtataagct 27517969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 30496622 - 30496701
Alignment:
Q  213 aagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 292  Q
    |||||| ||||| |||||||||||||||||| ||| ||| |||||| ||| |||||||||||| ||| | ||||| |||||    
T  30496622 aagcgcatatcacataagtgtttatgtataaacta-tttctataacaaaatataaaataaagtcaaattgttttcgtataa 30496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 31341109 - 31341192
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 293  Q
    ||||||||| |||||| ||| || |||||||||||||| ||| |||||| ||| |||||||||||| |||||  ||| |||||||    
T  31341109 cataagcgcttatcatctaaatgcttatgtataagcta-tttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 35536026 - 35536105
Alignment:
Q  214 agcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 293  Q
    ||||| ||||||||||  | |||||||||||||| ||| ||||||| || |||||||||||| ||| | ||||||||||||    
T  35536026 agcgcttatcatataaaggcttatgtataagcta-tttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
T  36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 39551693 - 39551618
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| |||| |||||||||| ||| |||||| ||| ||| | |||||| ||||| ||||||||||||||    
T  39551693 tatcatataagtatttaagtataagcta-tttctataacaaaagatatactaaagtaaaactgttttcatataagct 39551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 40689088 - 40689056
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||| ||||||||||||||||    
T  40689088 ataaaataaagttaaattattttcatataagct 40689056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 2034575 - 2034494
Alignment:
Q  228 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaa 310  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||| |||  |||||||||    
T  2034575 aagtgcttatgtataagctgttttt-acaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaa 2034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 7351763 - 7351678
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||| | |||||||||| || |||||||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||||||    
T  7351763 cataagctcttatcatataaatgcttatgtataaactatttat-ataataaactataaaataaagttaaactgttttcatataagct 7351678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 32513752 - 32513825
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctg 296  Q
    |||||| |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||||||| |||||||||||    
T  32513752 tcatattagtgtttatgcataagttatttct-ataacaaaaataaaataaagtcaaactatttccatataagctg 32513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 10452505 - 10452430
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||||| |||| ||||||||||||||||| | ||||||||  |||||||||| | ||||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttct-ataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 3217344 - 3217262
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 293  Q
    |||||||  ||||||||||||| |||||||||||||||||||  ||| | || |||||||||||| ||| ||||||||||||||    
T  3217344 ataagcgattatcatataagtgcttatgtataagctatttttg-taagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 385  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 32975875 - 32975933
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||||||||||| |||||    
T  32975875 ttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttattt 32975933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 1402964 - 1402996
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||||||||||||||||||||    
T  1402964 ataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 10032496 - 10032571
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 295  Q
    |||||||||| ||||||||||||||||| |||||||||||| |  | ||||||||  |||||| |||||||||||||    
T  10032496 tatcatataaatgtttatgtataagcta-tttttataacaataggtgaaataaaggcaaactaatttcatataagct 10032571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
T  27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 9833270 - 9833168
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 290  Q
    ||||||||||||| ||| ||||||||  ||||||||||||| || | |||||| || ||| ||| |||| | |||||||||||| ||||| ||||| |||    
T  9833270 ttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagata-tttctattacaataaataaaataaagtcaaactgttttcttat 9833172  T
Q  291 aagc 294  Q
    ||||    
T  9833171 aagc 9833168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 24332858 - 24332924
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaa 277  Q
    ||||||| | |||| |||||||| ||||||||||||||||| || ||| ||| |||||||||||||||    
T  24332858 cataagcacttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagttaa 24332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
T  32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 22742281 - 22742366
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 295  Q
    ||||||||| |||| |||||||  |||| ||||||||| ||| |||||||||  |||||||||||| ||| | ||||||||||||||    
T  22742281 cataagcgcttatcgtataagttcttatctataagcta-tttgtataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 30817709 - 30817671
Alignment:
Q  223 catataagtgtttatgtataagctattttttataacaaa 261  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  30817709 catataagtgcttatgtatatgctattttttataacaaa 30817671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
T  30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
Q  341 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 395  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 33068734 - 33068676
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 250  Q
    ||||||||||||| ||| ||||||||| ||||| |||| || ||||||||||| |||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttattt 33068676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 27693581 - 27693507
Alignment:
Q  222 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 297  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  27693581 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 399  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 393  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
T  32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 33911422 - 33911366
Alignment:
Q  224 atataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 280  Q
    |||||||||||||||||||| ||| |||||||||| ||| || |||||||||||||||    
T  33911422 atataagtgtttatgtataatcta-tttttataacaaaagatcaaataaagttaaact 33911366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 2027523 - 2027479
Alignment:
Q  249 tttttataacaaac-ataaaataaagttaaactattttcatataa 292  Q
    |||||||||||||  |||||||||||| |||||||||||||||||    
T  2027523 tttttataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 8010282 - 8010349
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 288  Q
    ||||||||||||| ||| |||||||||| ||| ||||||||  |||||||||||| || ||| ||||||    
T  8010282 tatcatataagtgcttaggtataagcta-tttctataacaacaataaaataaagtcaatctactttcat 8010349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 28660877 - 28660833
Alignment:
Q  249 tttttataacaa-acataaaataaagttaaactattttcatataa 292  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  28660877 tttttataacaatagataaaataaagttaaattattttcatataa 28660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
Q  350 agttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
T  31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 25459770 - 25459696
Alignment:
Q  218 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 293  Q
    |||||||| |||||| || ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  25459770 cgtatcatgtaagtgcttttgtataaactattgtt-ataacaaagataatataaagataaactattttcatataag 25459696  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 16790501 - 16790432
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcata 289  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| | ||| ||||||||||    
T  16790501 tatcatataagtgcttatgtataagctat-ttttataacaacagataaaataaaatcaaattattttcata 16790432  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 25183134 - 25183058
Alignment:
Q  220 tatcatataagtgttta-tgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||  || |||||||||||| |||||||||||| ||||    
T  25183134 tatcatataagtgtttaatgtataaactattttt-ataacaaaagattaaataaagttaagctattttcatatgagct 25183058  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 28843012 - 28842971
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctatttt 251  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  28843012 cataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 38462206 - 38462277
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatata 291  Q
    |||||||||||||||||| ||||||||| ||| |||| | ||| |||||||||||| ||||| ||||||||||    
T  38462206 tatcatataagtgtttatttataagcta-tttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 49772813 - 49772781
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttt 252  Q
    |||||||||||||||||||||||||||||||||    
T  49772813 tatcatataagtgtttatgtataagctattttt 49772781  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
Q  340 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 22232742 - 22232824
Alignment:
Q  211 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 293  Q
    |||||| | |||||||||| || | ||||||||||||||| | ||||||||  |||||||||||| ||||| ||||||||||||    
T  22232742 ataagctcttatcatataaatgctcatgtataagctatttat-ataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 28779274 - 28779356
Alignment:
Q  213 aagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 295  Q
    |||||| |||||||||| || || |||||||||| ||||| ||||||  | || ||||||||| ||||||||||||||||||||    
T  28779274 aagcgcttatcatataattgcttttgtataagctgttttt-ataacatcagatgaaataaagtcaaactattttcatataagct 28779356  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 32703063 - 32703138
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 295  Q
    |||||||||| |||||||||||||||||||| |  ||  ||| |||||||||| | ||| | ||||||||||||||    
T  32703063 tatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
Q  341 catgtcataagttattttcataagctctctcaaatagtct 380  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
Q  350 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 397  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
Q  339 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
T  50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 12985497 - 12985399
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatata---agtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 288  Q
    ||||||||||||| || | |||||||| |||||| ||   |||||||||||||||| | ||| | |||||||| ||||||||||| |||||| |||||||    
T  12985497 ttaattaagtgtttattctataagcgcttatcatgtagtaagtgtttatgtataagttgtttct-ataacaaa-ataaaataaagataaactgttttcat 12985400  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtct 380  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
Q  346 cataagttattttcataagctctctcaaatagtcttaca 384  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
Q  338 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 411  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
T  50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  235 tatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  1395611 tatgtataagctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
Q  342 atgtcataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 33965665 - 33965564
Alignment:
Q  192 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatat 290  Q
    ||||||||| | | ||| ||||| | |||||  |||| |||||| |||| ||| ||||||||||||| |||  ||||||||||| ||||| |||||||||    
T  33965665 ttaattaagcgcttatagcataaacacgtattgtataggtgtttttgtacaagttattttttataacaaaaggtaaaataaagtcaaactgttttcatat 33965566  T
Q  291 aa 292  Q
    ||    
T  33965565 aa 33965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
Q  338 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 394  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
T  2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 9279481 - 9279417
Alignment:
Q  210 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 274  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||  || ||| ||| ||||||||    
T  9279481 cataagcgcttatcatataagcatttatgtataagttattttttcgaaaaaagatacaataaagt 9279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 37689509 - 37689454
Alignment:
Q  240 ataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||    
T  37689509 ataagctattttt-ataacaaaagataaagtaaagttaaattattttcatataagct 37689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 41028996 - 41028921
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| | |||||||||| || || |||||| |||||||    
T  41028996 tatcatataagtgcttatgtataagcta-tttctataacaaaagaaaaaataaagtcaatctgttttcaaataagct 41028921  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 42809242 - 42809305
Alignment:
Q  236 atgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 299  Q
    ||||||||||||||| | ||||||||  |||||||| ||||||| | ||||||||||||||||||    
T  42809242 atgtataagctatttct-ataacaaaagataaaatatagttaaattgttttcatataagctgttt 42809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 43116573 - 43116498
Alignment:
Q  220 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 295  Q
    ||||||| |||||||||||| ||||||| ||| |||||| ||| ||||||| || | |||| |||||||||||||||    
T  43116573 tatcatacaagtgtttatgtgtaagcta-tttctataacaaaagataaaatcaaatcaaacaattttcatataagct 43116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 44284217 - 44284134
Alignment:
Q  206 ataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 289  Q
    ||||||||||||  ||||||||||||  | |||||||||||| ||| |||||| ||| |||||| ||||| ||||| ||||||||    
T  44284217 ataccataagcgattatcatataagtactaatgtataagcta-tttctataacaaaaaataaaacaaagtcaaactgttttcata 44284134  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
Q  347 ataagttattttcataagctctctcaaatagtcttacaagt 387  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 6600 - 6568
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| ||||||||||||||||||||    
T  6600 ataaaataaagtcaaactattttcatataagct 6568  T

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Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 13620 - 13588
Alignment:
Q  263 ataaaataaagttaaactattttcatataagct 295  Q
    |||||||||||| ||||||||||||||||||||    
T  13620 ataaaataaagtcaaactattttcatataagct 13588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 21409 - 21334
Alignment:
Q  234 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 309  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  21409 ttatgtataagctattttt-ataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagcta 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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