View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_low_4 (Length: 458)
Name: NF3921_low_4
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_4 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 9498 - 9927
Alignment:
| Q |
18 |
gtttggaataggttcgattatgttgctttttcgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaagg |
117 |
Q |
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| T |
9498 |
gtttggaataggttcgattatgttgcttttccgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaagg |
9597 |
T |
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| Q |
118 |
attgcaaaaaatatgcttggtgttgctcttgaggaacatgatggtgatgttgatgttgtttatcttgataatacttatgctaatcctacttatgattttc |
217 |
Q |
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| T |
9598 |
attgccaaaaatatgcttggtgttgctcttaaggaacatgatggtgatgttgatgttgtttatcttgataatacttatgctaatcctacttatgattttc |
9697 |
T |
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| Q |
218 |
ctaatcgtagcgttgcggctcagcaggtacattgtaattctatcattcttggccccaatttgaaaaatttactgaattatagttttatgatagatatgtt |
317 |
Q |
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| T |
9698 |
ctactcgtagcgttgcggctcagcaggtacattgtaattctatcattcttggccccaatttg-aaaattcactgagttatggatttgggataggaatgct |
9796 |
T |
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| Q |
318 |
gtgataattgtgttagggttcagaaatttggattattgaatatcgaataaggattgtgcattttcgattcctcgtgaaattcatgcatgtttttagaaaa |
417 |
Q |
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| T |
9797 |
gtgataattgttttagggtttagaaattggggttattgaatattgaataaggattgtccattttcgattcctcgtgaaattcatgcatgtttttagaaaa |
9896 |
T |
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| Q |
418 |
tttatctgctactttcattactgttgttcat |
448 |
Q |
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| T |
9897 |
tttatctgcaactttcattactgttgttcat |
9927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 21910310 - 21910658
Alignment:
| Q |
19 |
tttggaataggttcgattatgttgctttttcgcggagattttggttgtgtgctttatactggtgattttcgttgggaagctggttgtgagaaggcaagga |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||| | |||||||||||||||||| |
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| T |
21910310 |
tttggaataggttcgattatgttgctttttcgtggagattttggttgtgagcttcataccggtgattttcgttgggaaggtagttgtgagaaggcaagga |
21910409 |
T |
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| Q |
119 |
ttgcaaaaaatatgcttggtgttgctcttgaggaacatgatggtgatgttgatgttgtttatcttgataatacttatgctaatcctacttatgattttcc |
218 |
Q |
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| T |
21910410 |
ttgctagagaaatgcttggtgttgctctaaaggaacatgatggtgttgttgatgttgtttgccttgataatacttatgctaatcctacttatgaatttcc |
21910509 |
T |
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| Q |
219 |
taatcgtagcgttgcggctcagcaggtacattgtaattctatcattcttggccccaatttgaaaaatttactgaattatagttttatgatagatatgttg |
318 |
Q |
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| T |
21910510 |
tagtcgtagcgttgcggctcaacaggtacattgcaattctatcattgtt-gccctaatttgaaacattcattgagttatgaatttgggatagaaatgctg |
21910608 |
T |
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| Q |
319 |
tgataattgtgttagggttcagaaatttggattattgaatatcgaataag |
368 |
Q |
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|||||||||||||||||||| |||| | |||||| ||||||||||||||| |
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| T |
21910609 |
tgataattgtgttagggttcggaaaatgggattaatgaatatcgaataag |
21910658 |
T |
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