View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3921_low_6 (Length: 411)

Name: NF3921_low_6
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3921_low_6
NF3921_low_6
[»] chr3 (2 HSPs)
chr3 (11-340)||(5881805-5882132)
chr3 (11-340)||(54943255-54943582)
[»] chr4 (2 HSPs)
chr4 (11-340)||(43946157-43946482)
chr4 (131-212)||(50784354-50784434)
[»] scaffold0182 (1 HSPs)
scaffold0182 (11-340)||(526-855)
[»] chr7 (1 HSPs)
chr7 (11-340)||(47930455-47930782)
[»] chr6 (1 HSPs)
chr6 (11-307)||(16859029-16859324)
[»] chr5 (2 HSPs)
chr5 (11-340)||(12833851-12834183)
chr5 (11-340)||(12865829-12866161)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 5882132 - 5881805
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| || | ||||||    
T  5882132 attgtcatgtacactttcattcttttcatttctatccactcagacacattaatctttaaatatggttagtgtctctttagataggcggccagtaaatcac 5882033  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||| ||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  5882032 gttttcctttaaatcatgacataaaacaactttaaca--tataatctctaattcttaactacttaaaatcaaggtaaatttacatctaatagcatgcaaa 5881935  T
Q  211 tgcccttttgcttcatcaaacccaactccacaattnnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttat 310  Q
    ||| |||||||||||||||||||||||||| ||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  5881934 tgcgcttttgcttcatcaaacccaactccaaaattaaaaaaaatctttgcaaaaataatcttattttaaaaataaaaaatgaccaacattttcttttcat 5881835  T
Q  311 ttatgttacaaaatttaaacaaacccgtgc 340  Q
    ||||||||||||||||||||||||||||||    
T  5881834 ttatgttacaaaatttaaacaaacccgtgc 5881805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 54943582 - 54943255
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |  | ||| ||    
T  54943582 attgtccattacactttcattcttttcatttctatccactcagacacattaatctttaaatatggttagtgtctctttagataggcggcctgtaaattac 54943483  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  54943482 gttttgcttgaaatcatgacataaaacaactttaaca--tataatctctaattcttaactacttaaaatcaaggcagatttacatctgatagcatgcaaa 54943385  T
Q  211 tgcccttttgcttcatcaaacccaactccacaattnnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttat 310  Q
    ||| ||||| |||||||||||||||||||| ||||        ||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||    
T  54943384 tgcgcttttacttcatcaaacccaactccaaaatttaaaaaaatctttgcaaaaataatcctactttaaaaataaaaaatgaccaacattttcttttgat 54943285  T
Q  311 ttatgttacaaaatttaaacaaacccgtgc 340  Q
    |||||||||||||||||| |||||||||||    
T  54943284 ttatgttacaaaatttaagcaaacccgtgc 54943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 43946157 - 43946482
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||||  | ||||||    
T  43946157 attgtcaagtacactttcattcttttcatttctatccactcggacactttaatctttaaatatggttagtgtctctttagataggcggtctgtaaatcac 43946256  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||||||||||||||| ||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43946257 gttttgcttgaaatcatgacataaaacaactttaac----ataatctttaattcttaactacttaaaatcaaggcaaatttacatctaatagcatgcaaa 43946352  T
Q  211 tgcccttttgcttcatcaaacccaactccacaattnnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttat 310  Q
    ||| |||||||||||||||||||||||||| || |        |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  43946353 tgcgcttttgcttcatcaaacccaactccaaaaataaaaaaaatctttgcaaaaataatcttattttaaaaataaaaaatgaccaacattttcttttcat 43946452  T
Q  311 ttatgttacaaaatttaaacaaacccgtgc 340  Q
    |||||||| ||||||||  |||||||||||    
T  43946453 ttatgttaaaaaatttagtcaaacccgtgc 43946482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 50784434 - 50784354
Alignment:
Q  131 ataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaatg 212  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  50784434 ataaaacaactttaa-acatataatctctaattcttaactacttaaaatcacggcaaatttacatctaatagtatacaaatg 50784354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 855 - 526
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||| |  | ||||||    
T  855 attgtcaagtacactttcattcttttcatttctatccactcagacacaataatttttaaatatggttagtgtctctttagataggcggcctgtaaatcac 756  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  755 gttttacttgaaatcatgacataaaacaactttaaca--tataatctctaattcttaactacttaaaatcaaggcaaatttacatctaatagcatgcaaa 658  T
Q  211 tgcccttttgcttcatcaaacccaactccacaat--tnnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttcttttt 308  Q
    ||| |||||||||||||||||||||||||| |||            ||||||||||||||||||||||||| |||||||||| ||||||||||||||||     
T  657 tgcgcttttgcttcatcaaacccaactccaaaataaataaataaacctttgcaaaaataatcttattttaaaaataaaaaattaccaacattttcttttc 558  T
Q  309 atttatgttacaaaatttaaacaaacccgtgc 340  Q
    |||||||||||||||||||| |||||||||||    
T  557 atttatgttacaaaatttaagcaaacccgtgc 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 47930782 - 47930455
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |  | ||| ||    
T  47930782 attgtccattacactttcattcttttcatttctatccactcagacacattaatctttaaatatggttagtgtctctttagataggcggcctgtaaattac 47930683  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  47930682 gttttgcttgaaatcatgacataaaacaactttaaca--tataatctctaattcttaactacttaaaatcaaggcagatttacatctgatagcatgcaaa 47930585  T
Q  211 tgcccttttgcttcatcaaacccaactccacaattnnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttat 310  Q
    ||| ||||| |||||||||||||||||||| ||||        ||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||    
T  47930584 tgcgcttttacttcatcaaacccaactccaaaatttaaaaaaatctttgcaaaaataatcctactttaaaaataaaaaatgaccaacattttcttttgat 47930485  T
Q  311 ttatgttacaaaatttaaacaaacccgtgc 340  Q
    |||||||||||||||||| |||||||||||    
T  47930484 ttatgttacaaaatttaagcaaacccgtgc 47930455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 16859029 - 16859324
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatatttaaatatgggtagtgtctttttagataggcggtcaatgaatcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |  | ||||||    
T  16859029 attgtcaagtacactttcattcttttcatttctatccactcagacacattaatctttaaatatggttagtgtctctttagataggcggcctgtaaatcac 16859128  T
Q  111 gttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgcaaa 210  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  16859129 gttttgcttgatatcatgacataaaacaactttaac--atataatctctaatttttaactacttaaaatcaaggaaaatttacatctaatagcatgcaaa 16859226  T
Q  211 tgcccttttgcttcatcaaacccaactccacaatt-nnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttt 307  Q
    ||| |||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16859227 tgcgcttttgcttcatcaaacccaactccaaaattaaaaaaaaatctttgcaaaaataatcttattttaaaaataaaaaatgaccaacattttctttt 16859324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 12833851 - 12834183
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaata---tttaaatatgggtagtgtctttttagataggcggtcaatgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||| |||||| | ||||||||||||| |  | |||    
T  12833851 attgtcaagtacactttcattcttttcatttctatccactcagacacgttaatcaactttaaatatggttagtgtttctttagataggcggcctgtaaat 12833950  T
Q  108 cacgttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgc 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12833951 cacgttttgcttgaaatcatgacataaaacaactttaacatat--aatctctaattcttaactacttaaaatcaaggcagatttacatctaatagcatgc 12834048  T
Q  208 aaatgcccttttgcttcatcaaacccaactccacaatt--nnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctt 305  Q
    |||||| |||||||||||||||||||||||||| || |          |||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  12834049 aaatgcgcttttgcttcatcaaacccaactccaaaaataaaataaaaatctttgcaaaaatactcttattttaaaaataaaaaatgatcaacattttctt 12834148  T
Q  306 tttatttatgttacaaaatttaaacaaacccgtgc 340  Q
    || |||||||||| ||||||||| |||||||||||    
T  12834149 ttcatttatgttaaaaaatttaatcaaacccgtgc 12834183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 12865829 - 12866161
Alignment:
Q  11 attgtcaagtacactttcattcttttcatttctatccactcagacacattaata---tttaaatatgggtagtgtctttttagataggcggtcaatgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||| |||||| | ||||||||||||| |  | |||    
T  12865829 attgtcaagtacactttcattcttttcatttctatccactcagacacgttaatcaactttaaatatggttagtgtttctttagataggcggcctgtaaat 12865928  T
Q  108 cacgttttgcttgaaatcataacataaaacaactttaacatatataatctctaattcttaactacttaaaatcaaggcaaatttacatataatagcatgc 207  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12865929 cacgttttgtttgaaatcatgacataaaacaaatttaacatat--aatctctaattcttaactacttaaaatcaaggcagatttacatctaatagcatgc 12866026  T
Q  208 aaatgcccttttgcttcatcaaacccaactccacaatt--nnnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctt 305  Q
    |||||| |||||||||||||||||||||||||| || |          |||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  12866027 aaatgcgcttttgcttcatcaaacccaactccaaaaataaaataaaaatctttgcaaaaatactcttattttaaaaataaaaaatgatcaacattttctt 12866126  T
Q  306 tttatttatgttacaaaatttaaacaaacccgtgc 340  Q
    || |||||||||| ||||||||| |||||||||||    
T  12866127 ttcatttatgttaaaaaatttaatcaaacccgtgc 12866161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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