View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3921_low_8 (Length: 352)
Name: NF3921_low_8
Description: NF3921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3921_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 16471630 - 16471297
Alignment:
| Q |
11 |
caaaggtacaaagtacaacgggatagaaaacttatggttgattgaga---------aaaactgaatgttgaacactttataagggagatgactcatatac |
101 |
Q |
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| T |
16471630 |
caaaggtacaa-gtacaacgggatagaaaacttctggttgattgagggggagatagaaaactgaatgttgaacactttataagggacatgactcatatac |
16471532 |
T |
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| Q |
102 |
ctagtgtggtgtcaacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatc |
201 |
Q |
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| T |
16471531 |
ctagtgtggtgtcaacctctcattcagctaactgtctttatcattttggcaacttagaattgttttatgattggtttgttccgttgtgaaatttgagatc |
16471432 |
T |
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| Q |
202 |
tttacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtat |
301 |
Q |
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| T |
16471431 |
tttacatgtgttgtattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaacaagatcaatggagtat |
16471332 |
T |
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| Q |
302 |
atgttggtgacctagatcaacagattggtgagtat |
336 |
Q |
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| T |
16471331 |
atgttggagacctagatcaacagattggtaagtat |
16471297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 104 - 336
Target Start/End: Complemental strand, 16464504 - 16464275
Alignment:
| Q |
104 |
agtgtggtgtcaacctctcgttcagctaactgtctttatcattttggcaacttaggattgttttatgattggtttgttccgttgtgaaatttgagatctt |
203 |
Q |
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| T |
16464504 |
agtgtggtgtcaacctctcattcagctaactgtct--atcattttggcaacttagaattgttt-atgattggtttattccgttgtgaaatttgagatctt |
16464408 |
T |
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| Q |
204 |
tacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
303 |
Q |
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| T |
16464407 |
tacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatat |
16464308 |
T |
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| Q |
304 |
gttggtgacctagatcaacagattggtgagtat |
336 |
Q |
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| T |
16464307 |
gttggagacctagatcaacagattggtaagtat |
16464275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 16493879 - 16493785
Alignment:
| Q |
226 |
atgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttggtgacctagatca |
320 |
Q |
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| T |
16493879 |
atgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttggtgacctagatca |
16493785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 185 - 337
Target Start/End: Complemental strand, 44950366 - 44950214
Alignment:
| Q |
185 |
ttgtgaaatttgagatctttacatgtgttgtattttgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaa |
284 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
44950366 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaa |
44950267 |
T |
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| Q |
285 |
caagatcaatggagtatatgttggtgacctagatcaacagattggtgagtatt |
337 |
Q |
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| T |
44950266 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtatt |
44950214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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