View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3922_high_2 (Length: 561)
Name: NF3922_high_2
Description: NF3922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3922_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 220 - 539
Target Start/End: Complemental strand, 48287355 - 48287041
Alignment:
| Q |
220 |
tttttatgttttgtttctacttgaaagtttacacattgaaatgggaccacccaatcaagattgaatagttcaaatcttaaaatagnnnnnnnnnnnnngt |
319 |
Q |
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| T |
48287355 |
tttttatgttttgtttctacttgaaagtttacacattgaaatgggaccacccaatcaagattgaatagttcaaatcttaaaatagttttttattttt-gt |
48287257 |
T |
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| Q |
320 |
ttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatagtttaataaaagttttactgcattttcattg |
419 |
Q |
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| T |
48287256 |
ttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatggtttgataaaagttttaccgcattttcattg |
48287157 |
T |
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| Q |
420 |
gagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaattaaacaaatggaataacatgaatgaagatta |
519 |
Q |
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| T |
48287156 |
gagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgc----taaacaaatggaataacatgaatgaagatta |
48287061 |
T |
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| Q |
520 |
ttattaactaaaaaagtgat |
539 |
Q |
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|||||||||||| ||||||| |
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| T |
48287060 |
ttattaactaaacaagtgat |
48287041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 48287448 - 48287353
Alignment:
| Q |
17 |
atatacaaggtcatccaaaaacaaatgataataaaccaagcaaatttcaaagctacattataggtaaaacgtagtgtatgtctgaattggtggttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287448 |
atatacaaggtcatccaaaaacaaatgataataaaccaagcaaatttcaaagctacattataggtaaaacgtagtgtatgtctgaattggtggttt |
48287353 |
T |
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