View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3922_low_1 (Length: 648)
Name: NF3922_low_1
Description: NF3922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3922_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 465 - 639
Target Start/End: Complemental strand, 13475894 - 13475720
Alignment:
| Q |
465 |
ttcatcacctgaagtcggcacttgagttttagatgaacctttgatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaag |
564 |
Q |
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| T |
13475894 |
ttcattacctgaagtctgcacttgagttttagatgaacctttgatagtaatgatagacaacgaagaaacgaactagaagtcgcattttcattacctaaag |
13475795 |
T |
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| Q |
565 |
tctgtatccttttaatagaactcatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgc |
639 |
Q |
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| T |
13475794 |
tctgtgtaattttaatagaacatacgggaggtgagtgtaattttacttattcctatcattctcgtatttctctgc |
13475720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 465 - 640
Target Start/End: Original strand, 14020229 - 14020402
Alignment:
| Q |
465 |
ttcatcacctgaagtcggcacttgagttttagatgaacctttgatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaag |
564 |
Q |
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| T |
14020229 |
ttcattacctgaagtatgcacttgagttttagatgaacctttgatagtaacgacagacaacgaaggaatgaactagaagtcacattttcattacctgaag |
14020328 |
T |
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| Q |
565 |
tctgtatccttttaatagaactcatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgct |
640 |
Q |
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| T |
14020329 |
tccgtat--ttttaatagaacttatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgct |
14020402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 507 - 638
Target Start/End: Original strand, 14108462 - 14108593
Alignment:
| Q |
507 |
gatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaagtctgtatccttttaatagaactcatgggaggtgagtgtaatt |
606 |
Q |
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| T |
14108462 |
gatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctgaagtctgtatccttttaatagaacttatgggaggtgagtgtaatt |
14108561 |
T |
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| Q |
607 |
ttccttattcttatcattctcgtatttctctg |
638 |
Q |
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| T |
14108562 |
ttcattattcctatcattttcgtatttctctg |
14108593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 13476272 - 13476130
Alignment:
| Q |
217 |
ctttgaagatgtatcacggaagaagataaaaatgtattacattacaaacaaagtgcgaaaaatgtaaagttgcaaactctcttcctcaggtataatctac |
316 |
Q |
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| T |
13476272 |
ctttgaagatgtaccacggaaaaagataaaaatgtattact-----aacaaagtgcgaaaaatgtaaagttgcaaactctcttcctcaggtataatctac |
13476178 |
T |
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| Q |
317 |
cacttgattttttgctgacagagataagaaaattttattttctttctt |
364 |
Q |
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| T |
13476177 |
cacttgagtttttgctgagagggataagaaaatttaattttctttctt |
13476130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 14108390 - 14108451
Alignment:
| Q |
408 |
ctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcat |
469 |
Q |
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| T |
14108390 |
ctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcat |
14108451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13476659 - 13476599
Alignment:
| Q |
18 |
atttctacttaattgaatctttactttggaatatgaacttcacatcatgttaatttttgag |
78 |
Q |
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| T |
13476659 |
atttctacttaattgaatattttctttggaacatgaacttcacatcatgttaatttttgag |
13476599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 13476364 - 13476296
Alignment:
| Q |
87 |
cttacatagtgcggaaaaatgcaaagttgcagacagagtgcgaaaccaattattcattaatgatagatt |
155 |
Q |
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| T |
13476364 |
cttacaaagtgcaaaaaaatgcaaagttgcagacagagtgcgaaaccaattctacattaacgatagatt |
13476296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 13930393 - 13930482
Alignment:
| Q |
101 |
aaaaatgcaaagttgcagacagagtgcgaaaccaattattcattaatgatagattattacatgtgtgtgttatgttttacgatctcatgtata |
193 |
Q |
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| T |
13930393 |
aaaaatgcaaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgt-tgtgttaagttttac--tctcatgtata |
13930482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 14019803 - 14019859
Alignment:
| Q |
218 |
tttgaagatgtatcacggaagaagataaaaatgtattacattacaaacaaagtgcgaaaaat |
279 |
Q |
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| T |
14019803 |
tttgaagatgtatcatggaaga----aaaaatgtattaca-taccaacaaagtgcgaaaaat |
14019859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 24786788 - 24786909
Alignment:
| Q |
401 |
ttgctgtctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcatcacctgaagtcggcacttgagttttagatga |
500 |
Q |
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| T |
24786788 |
ttgctgtctttatcggttctcctgttgatgtggtaggttctaccccagcccgttccctcctattttctttacctgcagtctacacttgcgttttatatga |
24786887 |
T |
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| Q |
501 |
acctttgatagtaatgacagac |
522 |
Q |
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| T |
24786888 |
acatttgatagtaatgacagac |
24786909 |
T |
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