View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3922_low_4 (Length: 451)
Name: NF3922_low_4
Description: NF3922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3922_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 48287042 - 48286609
Alignment:
| Q |
1 |
atgaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaaggaacaaggaggcatgtcaccatttt |
100 |
Q |
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| T |
48287042 |
atgaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaaggaacaaggaggcatgtcaccatttt |
48286943 |
T |
|
| Q |
101 |
gaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaaccatcatggatttccaaccttgaaccctaacactcgttcttgttttcacctcaac |
200 |
Q |
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| T |
48286942 |
gaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaatcatcatggatttccaaccttgaaccctaacactcgttcttgttttcacctcaac |
48286843 |
T |
|
| Q |
201 |
actaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgtttctcattcaactcctcatgtctaaccttcgtttccgccttcaccgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48286842 |
actaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgtttctcattcaactcctcatgtctaaccttcgtttcccccttcaccgcc |
48286743 |
T |
|
| Q |
301 |
gtcttattcttcaccttcacatcaaacgcagccaccttcgtcgatcctaaattcaaatcaccattatctgcccatatctgaacactactttgttcaaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48286742 |
gtcttattcttcaccttcacatcaaacgcagccaccttcgtcgatcctaaattcaaatcaccattatctgcccatatctgaacactactttgttcaaaac |
48286643 |
T |
|
| Q |
401 |
gccacaccatttttgcattacggttcttcacttc |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48286642 |
gccacaccatttttgcattacggttcttcacttc |
48286609 |
T |
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