View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3923_high_1 (Length: 468)
Name: NF3923_high_1
Description: NF3923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3923_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 145 - 454
Target Start/End: Original strand, 28240009 - 28240318
Alignment:
| Q |
145 |
gcacatctaaacgatgtgttaagttttgctttttccttatttttctgttacatgatttatgctaggaattcatgggaagaaatttccttgctatgaatgt |
244 |
Q |
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| T |
28240009 |
gcacatctaaacgatgtgttaagtttttctttttccttattttgctgttacatgatttatgctaggaattcatgggaagaaatttccttgctatgaatgt |
28240108 |
T |
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| Q |
245 |
catgtggaagtacatggagcaggtaatacaactcttgtgcttacagcttttattttctttggatatgacatgttaactaagtatattgatttcaatgaaa |
344 |
Q |
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| T |
28240109 |
catgtggaagtacatggagcaggtaatacaactcttgtgcttacagcttttattttctttggatatgacatgttaactaagtatattgatttcaatgaaa |
28240208 |
T |
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| Q |
345 |
tgtaaatttcagacatcaagataaaaagaaagggaaatatactacacaacaactctttgcaagattttttgtcataagttgatataatactgactcttag |
444 |
Q |
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| T |
28240209 |
tgtaaatttcagacatcaagataaaaagaaagggaaatatactacacaacaactctttgcaagattttttgtcataagttgctataatactgactcttag |
28240308 |
T |
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| Q |
445 |
ttagaataat |
454 |
Q |
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|||||||||| |
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| T |
28240309 |
ttagaataat |
28240318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28239865 - 28239945
Alignment:
| Q |
1 |
tatgatgtccagttgattaagaaggttagtttcttacaagaggaattacatgagagataagtgagaaattgatatgcctgc |
81 |
Q |
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| T |
28239865 |
tatgatgtccagttgattaagaaggttagtttcttacaagtggaattacatgagagataagtgagaaattgatatgcctgc |
28239945 |
T |
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