View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3923_high_6 (Length: 308)
Name: NF3923_high_6
Description: NF3923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3923_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 39077338 - 39077473
Alignment:
| Q |
70 |
gtattttatgaaattactatgttgat---ttgactgtaatagaattagactttggacatggctaggtgattgttttgctggttgtgttctattgggacta |
166 |
Q |
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| T |
39077338 |
gtattttatgaaattactttgttgatgatttgactgtaatagaattagaatttggacatggcttggtgattgttttgctggttgtgttctattgggacta |
39077437 |
T |
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| Q |
167 |
tattcaaagatgattagttttctgattttaattgct |
202 |
Q |
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| T |
39077438 |
tatttaaagatggttagttttctgattttaattgct |
39077473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 39077508 - 39077610
Alignment:
| Q |
202 |
tgatatggaattggagatatgcacattgcctaagattcaatctggaacaatttcttaactaagaaaacttcatatcttctatgtgcatggtttaatcatg |
301 |
Q |
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| T |
39077508 |
tgatatggacttggagatatgcacattgcctaagattcaatctggaacaatttcttaactaagaaaacttcatatcttctatg----tggtttaatcatg |
39077603 |
T |
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| Q |
302 |
tttaaaa |
308 |
Q |
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| T |
39077604 |
tttaaaa |
39077610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 39072511 - 39072574
Alignment:
| Q |
11 |
cagagagcaggactcattacaaattgcggaatacctctttgtaaatgacatttgatgtagtatt |
74 |
Q |
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| T |
39072511 |
cagacagcaggactcattacaaattgcggaatacctctttgtaaatgacatttgatgtagtatt |
39072574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 2317303 - 2317405
Alignment:
| Q |
202 |
tgatatggaattggagatatgcacattgcctaagattcaatctggaacaatttcttaactaagaaaacttcatatcttctatgtgcatggtttaatcatg |
301 |
Q |
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| T |
2317303 |
tgatatggaattggagatatgcacattgcctaagattcaatctggaacaatttcttaactaagaaaacttcatatcttctatg----tggtttaatcatg |
2317398 |
T |
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| Q |
302 |
tttaaaa |
308 |
Q |
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| T |
2317399 |
tttaaaa |
2317405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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