View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3924_high_3 (Length: 271)
Name: NF3924_high_3
Description: NF3924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3924_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 6588011 - 6587763
Alignment:
| Q |
8 |
agattattctaatacaatgcatattcttaaagccgcaaggtctcacnnnnnnnnn--gagggcttggttaggatattatataaaaaaggcaatttttggc |
105 |
Q |
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| T |
6588011 |
agattattctaatacaatgcatattcttaaagccgcaaggtctcacaaaaaaaaaaagagggcttggttaggatattatataaaaaaggccatttttggc |
6587912 |
T |
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| Q |
106 |
tgtttgcatttgcactagaatgcgagcttccatatttcaagttttcctaaagccaaagtgcaccagcttctctaagcattttcttgagtgagccattgag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6587911 |
tgtttgcatttgcactagaatgcgagcttccatatttcaagttttcctaaagccaaagtgcaccagcttctctaagcattttcttgagtgagccattgag |
6587812 |
T |
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| Q |
206 |
atgaagggtcatgattatgttggctgaacccacaaacttgccaccaatg |
254 |
Q |
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| T |
6587811 |
atgaagggtcatgattatgttggctgaacccacaaacttgccaccaatg |
6587763 |
T |
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