View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3924_low_1 (Length: 678)

Name: NF3924_low_1
Description: NF3924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3924_low_1
NF3924_low_1
[»] chr5 (1 HSPs)
chr5 (1-82)||(4175762-4175843)
[»] chr1 (2 HSPs)
chr1 (570-657)||(50053874-50053963)
chr1 (353-385)||(50053966-50053998)
[»] chr6 (3 HSPs)
chr6 (570-657)||(31118187-31118276)
chr6 (353-385)||(31118152-31118184)
chr6 (298-344)||(31118082-31118129)
[»] chr8 (1 HSPs)
chr8 (83-127)||(40948354-40948398)
[»] chr3 (2 HSPs)
chr3 (353-385)||(40396497-40396529)
chr3 (310-344)||(40396440-40396474)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4175762 - 4175843
Alignment:
Q  1 tcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  4175762 tcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta 4175843  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 570 - 657
Target Start/End: Complemental strand, 50053963 - 50053874
Alignment:
Q  570 ttcaattgattcttgttcaatcccttcttaagttcagatata--gcatgcttaattttgggcttcaattttatactttgattcttgctca 657  Q
    |||||| |||||||| ||||| |||||||||  |||||||||  |||||||||||||| ||| |||||||||||||  ||||||||||||    
T  50053963 ttcaatcgattcttgctcaattccttcttaatatcagatatatagcatgcttaattttcggcgtcaattttatactgcgattcttgctca 50053874  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 50053998 - 50053966
Alignment:
Q  353 cttctctgtttagggtttcattctcactttcaa 385  Q
    |||||||||||||||||||||||||||||||||    
T  50053998 cttctctgtttagggtttcattctcactttcaa 50053966  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 657
Target Start/End: Original strand, 31118187 - 31118276
Alignment:
Q  570 ttcaattgattcttgttcaatcccttcttaagttcagatat--agcatgcttaattttgggcttcaattttatactttgattcttgctca 657  Q
    |||||| |||||||| ||||| | |||||||  ||||||||  |||||||||||||||  || |||||||||||||  ||||||||||||    
T  31118187 ttcaatcgattcttgctcaattctttcttaatatcagatatatagcatgcttaattttcagcgtcaattttatactaggattcttgctca 31118276  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 31118152 - 31118184
Alignment:
Q  353 cttctctgtttagggtttcattctcactttcaa 385  Q
    |||||||||||||||||||||||||||||||||    
T  31118152 cttctctgtttagggtttcattctcactttcaa 31118184  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 31118082 - 31118129
Alignment:
Q  298 atggcgaacacgttt-caaatacgatctctatcttctctgcgaatacg 344  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  31118082 atggcaaacacgttttcaaatacgatctctaacttctctgcgaatacg 31118129  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
Q  83 gggaatggattgtctcctgtataaatgcctccagttttctcctgt 127  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  40948354 gggaatggattttctccggtgtaaatgcctccagttttctcctgt 40948398  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 40396497 - 40396529
Alignment:
Q  353 cttctctgtttagggtttcattctcactttcaa 385  Q
    |||||||||||||||||||||||||||||||||    
T  40396497 cttctctgtttagggtttcattctcactttcaa 40396529  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 40396440 - 40396474
Alignment:
Q  310 tttcaaatacgatctctatcttctctgcgaatacg 344  Q
    |||||||||||||||||| ||||||||||||||||    
T  40396440 tttcaaatacgatctctaacttctctgcgaatacg 40396474  T

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