View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3924_low_2 (Length: 396)

Name: NF3924_low_2
Description: NF3924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3924_low_2
NF3924_low_2
[»] chr4 (4 HSPs)
chr4 (19-389)||(19226488-19226858)
chr4 (300-352)||(20251146-20251196)
chr4 (300-343)||(965360-965404)
chr4 (303-346)||(48780181-48780222)
[»] chr8 (1 HSPs)
chr8 (300-351)||(12729141-12729190)
[»] chr3 (6 HSPs)
chr3 (303-349)||(33709572-33709619)
chr3 (302-351)||(23686025-23686072)
chr3 (302-351)||(24058262-24058309)
chr3 (300-347)||(50914726-50914771)
chr3 (301-352)||(8433158-8433209)
chr3 (301-351)||(52653524-52653572)
[»] chr1 (2 HSPs)
chr1 (301-351)||(49053555-49053603)
chr1 (301-351)||(49061135-49061183)
[»] chr7 (3 HSPs)
chr7 (301-351)||(30109836-30109885)
chr7 (304-351)||(1840401-1840448)
chr7 (303-351)||(24870114-24870162)
[»] chr5 (2 HSPs)
chr5 (301-351)||(28274147-28274197)
chr5 (303-351)||(36202866-36202912)
[»] chr2 (1 HSPs)
chr2 (303-351)||(34681420-34681466)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 19226488 - 19226858
Alignment:
Q  19 caggtaaacatgatcaacaatacatttgtaacacctggtaaatggtaatggtattgattcatatagaacatggtgtaaacccaaccactaagtgcatgat 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19226488 caggtaaacatgatcaacagtacatttgtaacacctggtaaatggtgatggtattgattcatatagaacatggtgtaaacccaaccaataagtgcatgat 19226587  T
Q  119 taataatatctagggttatatggtcataaataagaaggctaggtccattttccatcactctaaaaactacgctcgattaagaatccaaattacggggcac 218  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||   |||||||||| |||    
T  19226588 taataatatttagggttgtatggtcataaataagaaggttaggtccattttccatcactctgaaaattacgctcgattaagaacttaaattacgggacac 19226687  T
Q  219 ttcatcagatatggaaagacttcgtctcatatcttgacgatttttctaatttcatataatatcataataattatatagtcactatttaaccattgcaact 318  Q
     |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19226688 atcatcagatatggaaagacttcgtctcacatcttagcgatttttctaatttcatatattatcataataattatatagttactatttaaccattgcaact 19226787  T
Q  319 ttccaaatatatattttgaaaatttctctcacatcttacaaagcacacaaatgtttaaatctcctatgata 389  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19226788 ttccaaatatatattttggaaatttctctcacatcttacaaagcacacaaatgtttaaatctcctatgata 19226858  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 20251196 - 20251146
Alignment:
Q  300 ctatttaaccattgcaactttccaaatatatattttgaaaatttctctcacat 352  Q
    ||||||||| |||||||||||||||||  ||||||| ||||||||||||||||    
T  20251196 ctatttaacaattgcaactttccaaat--atattttaaaaatttctctcacat 20251146  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 965404 - 965360
Alignment:
Q  300 ctatttaaccattgcaactttccaaatatatatttt-gaaaattt 343  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||    
T  965404 ctatttaaccattgcaacttttcaaatttatattttagaaaattt 965360  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 48780181 - 48780222
Alignment:
Q  303 tttaaccattgcaactttccaaatatatattttgaaaatttctc 346  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  48780181 tttaatcattgcaactttccaa--atatattttgaaaatttctc 48780222  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 12729190 - 12729141
Alignment:
Q  300 ctatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  12729190 ctatttaaccattgcaactttccaaat--atattttggaaatttctctcaca 12729141  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 33709619 - 33709572
Alignment:
Q  303 tttaaccattgcaactttccaaatata-tattttgaaaatttctctca 349  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  33709619 tttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 23686072 - 23686025
Alignment:
Q  302 atttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  23686072 atttaaccattgcaactttccaaat--atattttggaaatttctctcaca 23686025  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 24058309 - 24058262
Alignment:
Q  302 atttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  24058309 atttaaccattgcaactttccaaat--atattttggaaatttctctcaca 24058262  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 50914726 - 50914771
Alignment:
Q  300 ctatttaaccattgcaactttccaaatatatattttgaaaatttctct 347  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  50914726 ctatttaaccattgcaacttttcaa--atatattttgaaaatttctct 50914771  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 8433158 - 8433209
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcacat 352  Q
    |||||||||||||||||||| ||| | ||||||||| ||||| |||||||||    
T  8433158 tatttaaccattgcaacttttcaagtttatattttggaaattcctctcacat 8433209  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 52653572 - 52653524
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||| ||||||||||||||||||  |||||||| ||||||||||||||    
T  52653572 tatttaatcattgcaactttccaaat--atattttggaaatttctctcaca 52653524  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 49053603 - 49053555
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  49053603 tatttaaccattgcaactttccaaat--atattttggaaatttctctcaca 49053555  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 49061183 - 49061135
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  49061183 tatttaaccattgcaactttccaaat--atattttggaaatttctctcaca 49061135  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 30109836 - 30109885
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  30109836 tatttaaccattgcaactttctaaatatatattttggaaa-ttctctcaca 30109885  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 1840448 - 1840401
Alignment:
Q  304 ttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||||||    
T  1840448 ttaaccattgcaacttttcaaatttatattttaaaaattactctcaca 1840401  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 24870162 - 24870114
Alignment:
Q  303 tttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||||||||| ||||||||||||| |||||||||||  || ||||||||    
T  24870162 tttaaccattacaactttccaaatttatattttgaatcttactctcaca 24870114  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 28274147 - 28274197
Alignment:
Q  301 tatttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||||||||    
T  28274147 tattcaaccattgcaactttccaaatttatattttggaagtttctctcaca 28274197  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 36202912 - 36202866
Alignment:
Q  303 tttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    |||||||||||||||||| |||  ||||||||| |||||||||||||||    
T  36202912 tttaaccattgcaacttttcaa--atatattttaaaaatttctctcaca 36202866  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 34681420 - 34681466
Alignment:
Q  303 tttaaccattgcaactttccaaatatatattttgaaaatttctctcaca 351  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  34681420 tttaaccattgcaacattccaaatat--attttgaaaatttctctcaca 34681466  T

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