View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3925_high_1 (Length: 600)

Name: NF3925_high_1
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3925_high_1
NF3925_high_1
[»] chr3 (9 HSPs)
chr3 (18-379)||(925896-926257)
chr3 (30-379)||(44702589-44702937)
chr3 (331-380)||(4584433-4584482)
chr3 (332-380)||(1941719-1941767)
chr3 (331-379)||(6460168-6460216)
chr3 (331-379)||(26948979-26949027)
chr3 (331-379)||(36076454-36076502)
chr3 (332-384)||(38653922-38653974)
chr3 (332-384)||(40014648-40014700)
[»] chr4 (3 HSPs)
chr4 (21-379)||(5454394-5454752)
chr4 (331-380)||(37590803-37590852)
chr4 (331-379)||(16904952-16905000)
[»] chr5 (3 HSPs)
chr5 (20-354)||(43026117-43026440)
chr5 (30-380)||(41391476-41391825)
chr5 (331-379)||(20655049-20655097)
[»] chr8 (3 HSPs)
chr8 (379-593)||(5355226-5355440)
chr8 (335-379)||(34815241-34815285)
chr8 (331-379)||(23353622-23353670)
[»] chr6 (5 HSPs)
chr6 (514-578)||(6128312-6128375)
chr6 (335-379)||(24165091-24165135)
chr6 (331-379)||(3593074-3593122)
chr6 (506-586)||(6687003-6687083)
chr6 (331-379)||(8539734-8539782)
[»] chr1 (3 HSPs)
chr1 (329-379)||(18855233-18855283)
chr1 (331-380)||(52687113-52687162)
chr1 (332-380)||(31018199-31018247)
[»] chr7 (4 HSPs)
chr7 (331-379)||(13786351-13786399)
chr7 (331-379)||(16376545-16376593)
chr7 (332-384)||(21804567-21804619)
chr7 (331-379)||(40969072-40969120)
[»] chr2 (2 HSPs)
chr2 (331-379)||(8700442-8700490)
chr2 (331-379)||(19596363-19596411)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 925896 - 926257
Alignment:
Q  18 aatttagcatcaaagtaatcatactttctcatgtcttttcaattatgtttagttatgtgcacaccaactgatttttccacctttccttgcttttctgttg 117  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  925896 aatttagcattaaagtaatcatactttctcatgtgttttcaattatgtttagttatgtgcacaccaactgttttttccacctttccttgcttttctgttg 925995  T
Q  118 atatcagtttcaatggttgatgttagcgttggtctatcgtaatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcatt 217  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925996 atatcagtttcaatggttgatgttagcgttggtctgtcataatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcatt 926095  T
Q  218 ggctgatttaagcttgcaacatgtcaaataaattcattgaactataattttacacactcactttggagtatcactttccatatgttatttgcatctataa 317  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  926096 ggctgatttaagcttacaacaggtcaaataaattcattgaactataattttacacactcactttggagtataactttccatatgttatttgcatctataa 926195  T
Q  318 tatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  926196 tatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 926257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 30 - 379
Target Start/End: Complemental strand, 44702937 - 44702589
Alignment:
Q  30 aagtaatcatactttctcatgtcttttcaattatgtttagttatgtgcacaccaactgatttttccacctttccttgcttttctgttgatatcagtttca 129  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    |||||||||||||||||||| || |||||||    
T  44702937 aagtaatcatactttctcatgtattttcaattatgtttagttatgtgcacacaaactg-tttttcgtgatttccttgcttttctgttgacataagtttca 44702839  T
Q  130 atggttgatgttagcgttggtctatcgtaatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcattggctgatttaag 229  Q
    ||||||||||||||||||||||| || ||||||||||||||||  ||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||    
T  44702838 atggttgatgttagcgttggtctgtcataatggatggttaaacataaatacagggaatttgttagcttatgccgtatggttaagcattggctgatttaag 44702739  T
Q  230 cttgcaacatgtcaaataaattcattgaactataattttacacactcactttggagtatcactttccatatgttatttgcatctataatatcaatatatt 329  Q
    |||  |||| ||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  44702738 cttagaacaggtcaaataaattcattgaactgtaatgctacacactcactttggagtattactttccatatattatttgcatctataatatcaatatatt 44702639  T
Q  330 gcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||    
T  44702638 gcatctataatgtacatgacccgggtgttagcacgggtgaaaggtctagt 44702589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 4584482 - 4584433
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  4584482 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtg 4584433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 1941767 - 1941719
Alignment:
Q  332 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  1941767 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtg 1941719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 6460216 - 6460168
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  6460216 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 6460168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 26948979 - 26949027
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  26948979 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 36076502 - 36076454
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  36076502 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 36076454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 38653974 - 38653922
Alignment:
Q  332 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtgatta 384  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||| ||||    
T  38653974 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttatta 38653922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 40014700 - 40014648
Alignment:
Q  332 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtgatta 384  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||| ||||    
T  40014700 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtaatta 40014648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 5454394 - 5454752
Alignment:
Q  21 ttagcatcaaagtaatcatactttctcatgtcttttcaattatgtttagttatgtgcacaccaactgatttttccacctttccttgcttttctgttgata 120  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||    ||||||||||||||||||||||    
T  5454394 ttagcattgaagtaatcatactttctcatgtattttcaattatgtttagttatgtgcacaccaactc-tttatcgtgatttccttgcttttctgttgata 5454492  T
Q  121 tcagtttcaatggttgatgttagcgttggtctatcgtaatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcattggc 220  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  5454493 tcagtttcaatggttgatgttagcgttggtccatcataatggatggttaaacataaatacagggagtttgttagcttatgtcgtatggttaagcattggc 5454592  T
Q  221 tgatttaagcttgcaacatgtcaaataaattcattgaactataattttacacactcactttggagtatcactttccatatgttatttgcatctataatat 320  Q
    ||||||||||||  |||| |||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5454593 tgatttaagcttaaaacaggtcaaataaattaattgaactgtgattctacacactcactttggagtatcactttccatatattatttgcatctataatat 5454692  T
Q  321 caatatattgcatctataatgta-tatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  5454693 caatatattgcatctataatgtattatgacccgggcggcagcacggatgaaaggtctagt 5454752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 37590852 - 37590803
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  37590852 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtg 37590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 16905000 - 16904952
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  16905000 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 16904952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 43026440 - 43026117
Alignment:
Q  20 tttagcatcaaagtaatcatactttctcatgtcttttcaattatgtttagttatgtgcacaccaactgatttttccacctttccttgcttttctgttgat 119  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||||    
T  43026440 tttagcattgaagtaatcatactttctcatgtattttcaattatgtttagttatgtgcacaccaactgttttttcatgatttccttgcttttctgttgat 43026341  T
Q  120 atcagtttcaatggttgatgttagcgttggtctatcgtaatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcattgg 219  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||| ||||| | ||||||||| ||||||    
T  43026340 atcagtttcaatggttgatgttagcgttggtctgtcataatggatggttaaactaaaatac--ggagtttgttagcttatgccgtatggttaagcattgg 43026243  T
Q  220 ctgatttaagcttgcaacatgtcaaataaattcattgaactataattttacacactcactttggagtatcactttccatatgttatttgcatctataata 319  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |          || |||||||||||||||||||||||||||||    
T  43026242 ctgatttaagcttacaacaggtcaaataaattcattgaactataattttacacactta---------ttcgctttccatatgttatttgcatctataata 43026152  T
Q  320 tcaatatattgcatctataatgtatatgacccggg 354  Q
    |||||||||||||||||||| ||||||||||||||    
T  43026151 tcaatatattgcatctataacgtatatgacccggg 43026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 41391825 - 41391476
Alignment:
Q  30 aagtaatcatactttctcatgtcttttcaattatgtttagttatgtgcacaccaactgatttttccacctttccttgcttttctgttgatatcagtttca 129  Q
    ||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||    
T  41391825 aagtaatgatactttttcatgtattttcaatcatgtttagttatgtgcacaccaactg-tttttcatgatttccttgcttttctgttgatatcagtttca 41391727  T
Q  130 atggttgatgttagcgttggtctatcgtaatggatggttaaactaaaatacagggagtttgttaggttatgtcatatggttaatcattggctgatttaag 229  Q
    || ||| ||||||| ||| |||| || ||||| ||||||||||  ||||| |||||||||||||| || || | ||||||||| ||||||||||||||||    
T  41391726 atagttaatgttagtgttcgtctgtcataatgaatggttaaacataaatatagggagtttgttagcttctgccgtatggttaagcattggctgatttaag 41391627  T
Q  230 cttgcaacatgtcaaataaattcattgaactataattttacacactcactttggagtatcactttccatatgttatttgcatctataatatcaatatatt 329  Q
    |||  |||| ||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |    
T  41391626 cttagaacaggtcaaataaattcattgtactgtaattctacacactcactttggagcatcactttccatatattatttgcatctataatatcaatataat 41391527  T
Q  330 gcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  41391526 gcatctataatgtatatgacccgtgcgtcaacacgggtgaaaggtctagtg 41391476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 20655097 - 20655049
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  20655097 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 379 - 593
Target Start/End: Complemental strand, 5355440 - 5355226
Alignment:
Q  379 tgattaagaatctcatagtaccaaaaaaggggattatgggaaaatataaccctaatggttggtgtcttttgaaagacaagaatgagacgtaaggagaggg 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5355440 tgattaagaatctcatagtaccaaaaaaggggattatgcgaaaatataaccctaatggttggtgtcttttggaagacaagaatgagacgtaaggagaggg 5355341  T
Q  479 aacaaaaagataaatccatgacacttgtgttgagtgctttttatgagattcttgagtgagagtcaacaccatcaaagaggaaattcaaaagaggttttgg 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5355340 aacaaaaagataaatccatgacacttgtgttgagtgctttttatgagattcttgagtgagagtcaacaccatcaaagaggaaattcaaaagacgttttgg 5355241  T
Q  579 attgagggctctgtg 593  Q
    |||||||||||||||    
T  5355240 attgagggctctgtg 5355226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 34815241 - 34815285
Alignment:
Q  335 tataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||||||||||||||| |||||||||||||||| | |||||||    
T  34815241 tataatgtatatgacccgtgcgtcagcacgggtgataagtctagt 34815285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 23353670 - 23353622
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  23353670 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 514 - 578
Target Start/End: Complemental strand, 6128375 - 6128312
Alignment:
Q  514 gctttttatgagattcttgagtgagagtcaacaccatcaaagaggaaattcaaaagaggttttgg 578  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||    
T  6128375 gctttttgtgagattcttg-gtgcgagtcaacaccatcaaagagggaattcaaaagggcttttgg 6128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 24165135 - 24165091
Alignment:
Q  335 tataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||||||||||||||| |||||||||||||||| | |||||||    
T  24165135 tataatgtatatgacccgtgcgtcagcacgggtgataagtctagt 24165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 3593074 - 3593122
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  3593074 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 3593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 586
Target Start/End: Original strand, 6687003 - 6687083
Alignment:
Q  506 tgttgagtgctttttatgagattcttgagtgagagtcaacaccatcaaagaggaaattcaaaagaggttttggattgaggg 586  Q
    |||||||||||| || ||||||| |||  |||||  |||||  ||||||||||||| || |||| |||||||| |||||||    
T  6687003 tgttgagtgcttcttgtgagatttttggatgagatccaacataatcaaagaggaaactcgaaaggggttttgggttgaggg 6687083  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 8539734 - 8539782
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  8539734 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 18855283 - 18855233
Alignment:
Q  329 tgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  18855283 tgcatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 18855233  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 52687162 - 52687113
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  52687162 catctacaatgtatatgacccgtgcgacagcacgggtggaaagtctagtg 52687113  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 31018247 - 31018199
Alignment:
Q  332 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtg 380  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  31018247 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtg 31018199  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 13786351 - 13786399
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  13786351 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 16376593 - 16376545
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  16376593 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 16376545  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 21804619 - 21804567
Alignment:
Q  332 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtgatta 384  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||| ||||    
T  21804619 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttatta 21804567  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 40969072 - 40969120
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  40969072 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 40969120  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 8700442 - 8700490
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  8700442 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 8700490  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 19596411 - 19596363
Alignment:
Q  331 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 379  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  19596411 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 19596363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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