View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3925_high_10 (Length: 255)

Name: NF3925_high_10
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3925_high_10
NF3925_high_10
[»] chr8 (14 HSPs)
chr8 (119-255)||(39065466-39065596)
chr8 (184-255)||(28462534-28462606)
chr8 (158-246)||(39209327-39209417)
chr8 (197-255)||(900237-900296)
chr8 (192-255)||(39534137-39534200)
chr8 (184-255)||(41675662-41675733)
chr8 (194-255)||(42654638-42654699)
chr8 (205-249)||(14110626-14110670)
chr8 (187-255)||(20821941-20822009)
chr8 (191-255)||(41726947-41727011)
chr8 (183-255)||(44648928-44649000)
chr8 (185-255)||(13873748-13873818)
chr8 (185-255)||(20542438-20542508)
chr8 (184-249)||(29795562-29795627)
[»] chr3 (15 HSPs)
chr3 (154-255)||(44291197-44291292)
chr3 (156-255)||(15671079-15671179)
chr3 (182-255)||(42163595-42163669)
chr3 (184-255)||(44041315-44041387)
chr3 (192-255)||(23208143-23208207)
chr3 (186-255)||(27144050-27144120)
chr3 (188-249)||(49711001-49711062)
chr3 (194-249)||(43652470-43652525)
chr3 (212-255)||(43862992-43863035)
chr3 (184-255)||(17109525-17109597)
chr3 (184-255)||(35322060-35322129)
chr3 (193-246)||(43014707-43014761)
chr3 (196-255)||(32720523-32720583)
chr3 (203-255)||(36258729-36258782)
chr3 (191-255)||(4020149-4020213)
[»] scaffold1372 (2 HSPs)
scaffold1372 (182-249)||(1260-1327)
scaffold1372 (216-250)||(1376-1410)
[»] chr1 (19 HSPs)
chr1 (182-249)||(48282880-48282947)
chr1 (187-255)||(33827818-33827887)
chr1 (187-255)||(33840078-33840147)
chr1 (188-255)||(30627610-30627677)
chr1 (187-249)||(20471326-20471388)
chr1 (187-249)||(20560149-20560211)
chr1 (189-255)||(15419646-15419713)
chr1 (186-249)||(31884453-31884516)
chr1 (185-255)||(40391209-40391280)
chr1 (189-255)||(50468802-50468869)
chr1 (191-255)||(26855824-26855889)
chr1 (206-249)||(50127361-50127404)
chr1 (182-248)||(19066918-19066984)
chr1 (182-248)||(19114808-19114874)
chr1 (215-255)||(44109093-44109133)
chr1 (193-255)||(13969099-13969161)
chr1 (191-237)||(18786447-18786493)
chr1 (193-234)||(34347227-34347268)
chr1 (183-255)||(46295861-46295933)
[»] chr7 (9 HSPs)
chr7 (183-255)||(22035783-22035856)
chr7 (182-255)||(45907023-45907096)
chr7 (194-249)||(41434758-41434813)
chr7 (186-252)||(16861731-16861797)
chr7 (182-235)||(27364663-27364717)
chr7 (186-255)||(21798848-21798917)
chr7 (193-252)||(8117444-8117503)
chr7 (188-244)||(19689561-19689618)
chr7 (185-234)||(34993090-34993139)
[»] chr5 (9 HSPs)
chr5 (183-255)||(14863387-14863459)
chr5 (185-255)||(2611140-2611211)
chr5 (182-255)||(7609529-7609602)
chr5 (191-255)||(11320176-11320240)
chr5 (184-248)||(12187241-12187305)
chr5 (191-255)||(21052626-21052690)
chr5 (182-246)||(35185315-35185380)
chr5 (182-236)||(18677915-18677970)
chr5 (189-252)||(22180251-22180314)
[»] chr6 (3 HSPs)
chr6 (186-255)||(17506317-17506386)
chr6 (189-255)||(21809802-21809868)
chr6 (194-247)||(4803215-4803268)
[»] chr4 (10 HSPs)
chr4 (183-249)||(19147138-19147204)
chr4 (186-255)||(38319533-38319603)
chr4 (187-249)||(47397662-47397724)
chr4 (189-252)||(31241947-31242011)
chr4 (188-255)||(31647772-31647839)
chr4 (199-255)||(38320124-38320181)
chr4 (198-255)||(20542600-20542657)
chr4 (188-235)||(16004449-16004496)
chr4 (191-255)||(16341100-16341164)
chr4 (155-201)||(48743577-48743622)
[»] scaffold0034 (1 HSPs)
scaffold0034 (182-249)||(22413-22480)
[»] scaffold0886 (1 HSPs)
scaffold0886 (182-255)||(1094-1167)
[»] chr2 (8 HSPs)
chr2 (188-252)||(18243299-18243364)
chr2 (182-255)||(19889796-19889870)
chr2 (184-246)||(40574134-40574196)
chr2 (188-237)||(23760588-23760637)
chr2 (198-255)||(21646482-21646539)
chr2 (182-255)||(8580563-8580636)
chr2 (144-201)||(31807729-31807785)
chr2 (193-252)||(32345531-32345591)
[»] scaffold0078 (1 HSPs)
scaffold0078 (193-252)||(861-921)
[»] scaffold0006 (1 HSPs)
scaffold0006 (183-255)||(38852-38924)
[»] scaffold0117 (1 HSPs)
scaffold0117 (201-255)||(16838-16892)
[»] scaffold0079 (1 HSPs)
scaffold0079 (191-255)||(51697-51761)
[»] scaffold0068 (1 HSPs)
scaffold0068 (182-248)||(52070-52136)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 39065466 - 39065596
Alignment:
Q  119 gttaactcacatccctgatacactagttaaaaaacaa-gggtcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataattt 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||     ||||||||||||||||  |||||||||| |||||    
T  39065466 gttaactcacatccctgatacactagttaaaaaacaaggggtcttgttgaccagtgcttcg-----ggggcactggttaagg--tctataaatagaattt 39065558  T
Q  218 ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||  ||||||||||||||||||||||| |||||    
T  39065559 ctgtcttaaaaatataaactgtcactttttatcaagta 39065596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 28462534 - 28462606
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||    
T  28462534 ggggcactggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagta 28462606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 39209327 - 39209417
Alignment:
Q  158 gtcttgttgaccagtgccccggggccgg-ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 246  Q
    |||||||| |||||||| || ||| ||| |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  39209327 gtcttgttaaccagtgctcctgggacggtggcactagttaaggaatttataaatagaattttctgttttggaaatataaactgtcactttt 39209417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 900237 - 900296
Alignment:
Q  197 aggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| ||||||||||||||| |||||||| |||| |||||||||| |||||||||||||    
T  900237 aggaaactataaatataattttctgtcttgaaaatttaaactgtcattttttattaagta 900296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 39534137 - 39534200
Alignment:
Q  192 ggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||| |||||||||| || ||||||||||||| ||||||||||||||||  ||||| |||||    
T  39534137 ggttaaagaatctataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagta 39534200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 41675662 - 41675733
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| | |||||||||||| ||||| ||||||||| ||| ||||||||||| ||| ||||||| |||||    
T  41675662 ggggcaccgattaaggaatctacaaatagaatttctgttttgaaaatataaactatcattttttatcaagta 41675733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 42654699 - 42654638
Alignment:
Q  194 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||| |||||||| |||| ||||| |||||| |||||||||||| ||| |||||||||||||    
T  42654699 ttaaagaatctatcaataaaatttttgtcttagaaatataaactatcattttttattaagta 42654638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 14110626 - 14110670
Alignment:
Q  205 ataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  14110626 ataaatataatttttgtcttagaaatataaaccgtcactttttat 14110670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 20822009 - 20821941
Alignment:
Q  187 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||| ||||| |||||||| ||| ||||  ||||||  ||||||||| |||||||||||||||||||    
T  20822009 gcactgattaagaaatctatagatagaattgttgtcttaaaaatataaattgtcactttttattaagta 20821941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 41727011 - 41726947
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||| ||||| || || ||||||||||||||||| ||| | ||||||| |||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagta 41726947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 44648928 - 44649000
Alignment:
Q  183 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| ||||||||||||||| ||||| || || ||||||| ||||||||| ||| |||||| || |||||    
T  44648928 cggggcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagta 44649000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 13873818 - 13873748
Alignment:
Q  185 gggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| || |||||||||||||||||| ||||| |||||| |||||||||  ||| | |||| ||||||||    
T  13873818 gggcaatgattaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagta 13873748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 20542508 - 20542438
Alignment:
Q  185 gggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| ||||||||||||||| ||||| || ||  |||||||||||||||  ||| |||||| ||||||||    
T  20542508 gggcattggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagta 20542438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 29795627 - 29795562
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||| ||||||||||||| | ||||| ||||| | ||||  || ||||||||||||||||||||    
T  29795627 ggggcattggttaaggaatccaaaaatagaatttttatcttaaaactataaactgtcactttttat 29795562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 44291197 - 44291292
Alignment:
Q  154 aagggtcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaag 253  Q
    |||||||||||| |||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44291197 aagggtcttgttaaccagtgccccgg------ggcactggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaag 44291290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 15671079 - 15671179
Alignment:
Q  156 gggtcttgttgaccagtgcccc-ggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagt 254  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||    
T  15671079 gggtcttgttaaccagtgcccccggggcgggggcactggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagt 15671178  T
Q  255 a 255  Q
    |    
T  15671179 a 15671179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 42163595 - 42163669
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  42163595 ccggggcactggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttattaagta 42163669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 44041315 - 44041387
Alignment:
Q  184 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  44041315 ggggcactggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttattaagta 44041387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 23208143 - 23208207
Alignment:
Q  192 ggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  23208143 ggttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcactttttattaagta 23208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 27144120 - 27144050
Alignment:
Q  186 ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||| |||||||||||| ||||| |||| || |||||||||||||| |||||||||||||||    
T  27144120 ggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagta 27144050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 49711062 - 49711001
Alignment:
Q  188 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||| | |||||||    
T  49711062 cactggttaaggaatctataaatagaatttctgtcttagaaatataaaatgttattttttat 49711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 43652470 - 43652525
Alignment:
Q  194 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||| |||||||    
T  43652470 ttaaggaatctataaataaaatttctatcttggaaatataatctgtcattttttat 43652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 43863035 - 43862992
Alignment:
Q  212 taatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  43863035 taatttctgtcttggaaatataaactgtcactctttattaagta 43862992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 17109525 - 17109597
Alignment:
Q  184 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| ||||||| ||| |||||||| ||||| || ||||||||||||||||||| || ||||||||||||    
T  17109525 ggggcacgggttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagta 17109597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 35322129 - 35322060
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||| |||||||  |||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||    
T  35322129 ggggcattggttaaaaaatctataaatagaattt-tgtcttagaaatataaact-tcactttttattaagta 35322060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 43014761 - 43014707
Alignment:
Q  193 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 246  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  43014761 gttaaagaatttataaatataattttctgtcttggaaatataaattgtcactttt 43014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 32720523 - 32720583
Alignment:
Q  196 aaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||| |||| ||||| || ||||| ||||||||||||||||| |||||||||||    
T  32720523 aaggaatctattaatagaattttctttcttgaaaatataaactgtcactatttattaagta 32720583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 36258782 - 36258729
Alignment:
Q  203 ctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||| ||||| ||||||| |||||||||| ||||| |||||||||||||    
T  36258782 ctataaatagaattttctgtcttagaaatataaaatgtcattttttattaagta 36258729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 4020213 - 4020149
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||| ||||| || || ||||||| ||||||||| ||| | |||| ||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagta 4020149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 1260 - 1327
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1260 ccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttat 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 1376 - 1410
Alignment:
Q  216 ttctgtcttggaaatataaactgtcactttttatt 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  1376 ttctgtcttggaaatataaactgtcactttatatt 1410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 48282880 - 48282947
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  48282880 ccggggcactggttaaggaatctataaatagaatttctgtcttgaaaatataatctgtcactttttat 48282947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 33827818 - 33827887
Alignment:
Q  187 gcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  33827818 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagta 33827887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 33840147 - 33840078
Alignment:
Q  187 gcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  33840147 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagta 33840078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 30627610 - 30627677
Alignment:
Q  188 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||    
T  30627610 cactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttataaagta 30627677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 20471326 - 20471388
Alignment:
Q  187 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20471326 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20471388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 20560211 - 20560149
Alignment:
Q  187 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20560211 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20560149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 15419646 - 15419713
Alignment:
Q  189 actggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||| ||||||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  15419646 actggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttattaagta 15419713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 31884453 - 31884516
Alignment:
Q  186 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||||||||| || |||||||    
T  31884453 ggcacttgttaagaaatctataaatagaatttctatcttggaaatataaactgacattttttat 31884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 40391209 - 40391280
Alignment:
Q  185 gggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||| ||||| |||||||||||  ||||| |||||||| ||||||||||||||||||||||| |||||    
T  40391209 gggcactgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagta 40391280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 50468802 - 50468869
Alignment:
Q  189 actggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||||||||| || ||||| |||| ||||||||| |||||| |||||||||||||    
T  50468802 actggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttattaagta 50468869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 26855824 - 26855889
Alignment:
Q  191 tggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| ||||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||    
T  26855824 tggttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttatcaagta 26855889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 50127361 - 50127404
Alignment:
Q  206 taaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  50127361 taaatagaatttctgtcttggaaatataaactgtcattttttat 50127404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 19066984 - 19066918
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 248  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19066984 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19066918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 19114874 - 19114808
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 248  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19114874 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19114808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 44109093 - 44109133
Alignment:
Q  215 tttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  44109093 tttctatcttggaaatataaactgtccctttttattaagta 44109133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 13969099 - 13969161
Alignment:
Q  193 gttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||| ||||| || || ||||||| ||||||||| ||| |||||| ||||||||    
T  13969099 gttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagta 13969161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 18786447 - 18786493
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaact 237  Q
    |||||||||||||||||| || || || |||||||||||||||||||    
T  18786447 tggttaaggaatctataagtaaaacttttgtcttggaaatataaact 18786493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 34347227 - 34347268
Alignment:
Q  193 gttaaggaatctataaatataatttctgtcttggaaatataa 234  Q
    ||||| |||||||||||||||| || ||||||||||||||||    
T  34347227 gttaaagaatctataaatataaattttgtcttggaaatataa 34347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 46295861 - 46295933
Alignment:
Q  183 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||| ||||||||||||||| ||||| || || | ||||| ||||||||| ||| |||||| || |||||    
T  46295861 cggggcaatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagta 46295933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 22035856 - 22035783
Alignment:
Q  183 cggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  22035856 cggggcactggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcactttttaataagta 22035783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 45907023 - 45907096
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||| |||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| |||||    
T  45907023 ccggggcacgggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttatcaagta 45907096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 41434813 - 41434758
Alignment:
Q  194 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41434813 ttaaagaatctataaatataatttctgtcttagaaatataaactgtcactttttat 41434758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 16861797 - 16861731
Alignment:
Q  186 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaa 252  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  16861797 ggcaccggttaagaaatctataaatagaatttatgtcttggaaatataaactgtcattttttattaa 16861731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 27364717 - 27364663
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaa 235  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  27364717 ccggggcactggttaaggaatctataaatagaattttatgtcttggaaatataaa 27364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 21798917 - 21798848
Alignment:
Q  186 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| ||||||| |||| | ||||| ||||| |||||||||| |||||||||||| |||| ||||||||    
T  21798917 ggcacgggttaagaaatccaaaaatagaatttatgtcttggaattataaactgtcatttttcattaagta 21798848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 8117444 - 8117503
Alignment:
Q  193 gttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaa 252  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||| ||| | ||||||||||    
T  8117444 gttatggaatctataaatagaatttatgtcttgaaaatataaattgttattttttattaa 8117503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 19689618 - 19689561
Alignment:
Q  188 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactt 244  Q
    ||||| |||||||||||||||||| || ||||| ||||| ||||||||||| ||||||    
T  19689618 cactgattaaggaatctataaatacaactttctatcttgtaaatataaactatcactt 19689561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 34993090 - 34993139
Alignment:
Q  185 gggcactggttaaggaatctataaatataatttctgtcttggaaatataa 234  Q
    ||||| ||||||||||||||| |||||||| || ||||||| ||||||||    
T  34993090 gggcaatggttaaggaatctacaaatataaattttgtcttgaaaatataa 34993139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 14863459 - 14863387
Alignment:
Q  183 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  14863459 cgggacactggttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttatcaagta 14863387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 2611140 - 2611211
Alignment:
Q  185 gggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||    
T  2611140 gggcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagta 2611211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 7609529 - 7609602
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||| ||||||| |||||    
T  7609529 ccggggcactgattaaggaatctataattagaatttctgttttggaaatataaactatcattttttatcaagta 7609602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 11320240 - 11320176
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||| |||||    
T  11320240 tggttaaggaatctataattaaaatttctatcttagaaatataaactgtcactttttatcaagta 11320176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 12187305 - 12187241
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 248  Q
    |||||| ||||||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||||    
T  12187305 ggggcattggttaaagaatctacaaatagaatttttgtcttggaaatataaacggtcacttttta 12187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 21052626 - 21052690
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||| |||||||| ||||||  ||||| ||||||||||||||||||||||| |||||    
T  21052626 tggttaaggaatttataaataaaatttccatcttgcaaatataaactgtcactttttatcaagta 21052690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 35185380 - 35185315
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttc-tgtcttggaaatataaactgtcactttt 246  Q
    |||| ||||||||||| ||||||||||||| |||||  ||||||| ||||||||||||||||||||    
T  35185380 ccggagcactggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcactttt 35185315  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 18677915 - 18677970
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaac 236  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||    
T  18677915 ccggagcactggttaaggaatctataaatagaattttctatcttgaaaatataaac 18677970  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 22180251 - 22180314
Alignment:
Q  189 actggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattaa 252  Q
    |||| |||||||||||||||||| || ||||| | ||| ||||||||||||||| ||||||||||    
T  22180251 actgattaaggaatctataaataaaattttctattttgaaaatataaactgtca-tttttattaa 22180314  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 17506386 - 17506317
Alignment:
Q  186 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||| |||||    
T  17506386 ggcactggttaagaaatctataaatataatttatattttggaaatataaactgtcactttttatcaagta 17506317  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 21809802 - 21809868
Alignment:
Q  189 actggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||| |||||    
T  21809802 actggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcactttttatcaagta 21809868  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 4803268 - 4803215
Alignment:
Q  194 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttt 247  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||  |||||||    
T  4803268 ttaaagaatctataaatagaatttctgtgtttgaaatataaactgctacttttt 4803215  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 19147138 - 19147204
Alignment:
Q  183 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    |||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  19147138 cgggacactggttaagaaatctataagtagaatttctgtcttgaaaatataaactgtcactttttat 19147204  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 38319533 - 38319603
Alignment:
Q  186 ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||| ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||    
T  38319533 ggcattggttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactttttattaagta 38319603  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 47397724 - 47397662
Alignment:
Q  187 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  47397724 gcactggttaaggaatctataaatagaatttctattttagaaatataaactgtcactttttat 47397662  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 31241947 - 31242011
Alignment:
Q  189 actggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaa 252  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  31241947 actggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaa 31242011  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 31647839 - 31647772
Alignment:
Q  188 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| |||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||    
T  31647839 cactgattaaagaatctataaatagaatttctgtcttagaaatataaactatcactttttatcaagta 31647772  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 38320124 - 38320181
Alignment:
Q  199 gaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  38320124 gaatctataaatagaattttctgtcttggaaatataaactgtcacttcttattaagta 38320181  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 20542600 - 20542657
Alignment:
Q  198 ggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||| ||||||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  20542600 ggaatccataaataaaatttctatcttgtaaatataaactgtcactttttatcaagta 20542657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 16004496 - 16004449
Alignment:
Q  188 cactggttaaggaatctataaatataatttctgtcttggaaatataaa 235  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  16004496 cactgcttaagaaatctataaatagaatttctgtcttggaaatataaa 16004449  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 16341100 - 16341164
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||| || ||||| ||||| |||||| |||||||||| ||| |||||| ||||||||    
T  16341100 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagta 16341164  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 48743622 - 48743577
Alignment:
Q  155 agggtcttgttgaccagtgccccggggccggggcactggttaaggaa 201  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  48743622 agggtcttgttaaccagtgccccgggggc-gggcactggttaaggaa 48743577  T

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Target: scaffold0034 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 22413 - 22480
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 249  Q
    ||||| ||||| ||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  22413 ccgggacactgattaaggaatctataaatataacttttgtgttggaaatataaaccgtcactttttat 22480  T

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Target: scaffold0886 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 1094 - 1167
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| ||||||| ||| ||| |||||||| ||||| | ||||| |||||||||||||||||||||||||||||    
T  1094 ccgggacactggtcaagaaatttataaatagaatttttttcttgaaaatataaactgtcactttttattaagta 1167  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 18243299 - 18243364
Alignment:
Q  188 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattaa 252  Q
    |||||||||||||||||||||||| || ||| ||| ||||||||||||||| ||||||||||||||    
T  18243299 cactggttaaggaatctataaataaaattttttgttttggaaatataaactttcactttttattaa 18243364  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 19889870 - 19889796
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||||||||| |||||||||||| || ||| ||| ||||||||||||  |||||| ||||||||||||    
T  19889870 ccggggcactggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagta 19889796  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 40574134 - 40574196
Alignment:
Q  184 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 246  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||||||| ||| ||||||    
T  40574134 ggggcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaactttt 40574196  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 23760588 - 23760637
Alignment:
Q  188 cactggttaaggaatctataaatataatttctgtcttggaaatataaact 237  Q
    |||||||||| ||||||||||||||||||| ||||||  |||||||||||    
T  23760588 cactggttaacgaatctataaatataatttatgtcttaaaaatataaact 23760637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 21646482 - 21646539
Alignment:
Q  198 ggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||||| ||||||||||||    
T  21646482 ggaatctatacatagaattttctgtcttggaaatataaagtgtcac-ttttattaagta 21646539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 8580636 - 8580563
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||| ||| ||||||| || |||||||||| ||||  ||||||||||||||||  ||| |||||| ||||||||    
T  8580636 ccggtgcaatggttaaagattctataaatagaattgttgtcttggaaatataagatgttacttttgattaagta 8580563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 31807729 - 31807785
Alignment:
Q  144 gttaaaaaacaagggtcttgttgaccagtgccccggggccggggcactggttaaggaa 201  Q
    ||||||||| || |||| |||| |||||||||||| || |||||||||||||||||||    
T  31807729 gttaaaaaaaaaaggtcatgttaaccagtgccccgtgg-cggggcactggttaaggaa 31807785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 32345591 - 32345531
Alignment:
Q  193 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaa 252  Q
    |||||||||  |||||||| ||||| |||||||  ||||||||||||||| ||||||||||    
T  32345591 gttaaggaaattataaatagaattttctgtcttaaaaatataaactgtcattttttattaa 32345531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 861 - 921
Alignment:
Q  193 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattaa 252  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||    
T  861 gttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttattaa 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 38924 - 38852
Alignment:
Q  183 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||| |||||||||  |||||||||||| ||||| | ||||||||||||||||||||| ||||||| |||||    
T  38924 cggggtactggttaaaaaatctataaatagaatttatatcttggaaatataaactgtcattttttatcaagta 38852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 16838 - 16892
Alignment:
Q  201 atctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||    
T  16838 atctataaatagagtttctgtcttgaaaatataaactgtcactttttatcaagta 16892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 51761 - 51697
Alignment:
Q  191 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattaagta 255  Q
    |||||||||||| || ||||| ||||| |||||| |||||||||| ||| |||||| ||||||||    
T  51761 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagta 51697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 52136 - 52070
Alignment:
Q  182 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 248  Q
    |||| |||| ||||||| |||||||||||| ||||  |||||| |||||||||| ||||| ||||||    
T  52136 ccggagcacgggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcatttttta 52070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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