View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3925_high_3 (Length: 505)

Name: NF3925_high_3
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3925_high_3
NF3925_high_3
[»] chr5 (4 HSPs)
chr5 (4-501)||(369691-370197)
chr5 (5-43)||(14949608-14949646)
chr5 (4-37)||(11877470-11877503)
chr5 (4-37)||(18158386-18158419)
[»] chr8 (1 HSPs)
chr8 (4-43)||(12637987-12638026)
[»] chr1 (2 HSPs)
chr1 (1-43)||(10805019-10805061)
chr1 (4-37)||(18353096-18353129)
[»] chr4 (2 HSPs)
chr4 (4-37)||(40412852-40412885)
chr4 (1-37)||(8753867-8753903)


Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 501
Target Start/End: Complemental strand, 370197 - 369691
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattccaaccccaaacttcaactcacttttacatgacacaaacgactttacatttaattcatttttaatcaa 103  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370197 gcctatcaaagtcttgtctggcctgacctattccaacccctaacttcaactcacttttacatgacacaaacgactttacatttaattcatttttaatcaa 370098  T
Q  104 gaccaattctctcaaaatcagttcttatcatctcaatactaaaaatacatttactctcgtagtttcttagaggagcattttgaggcctatatgtacttgt 203  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||    
T  370097 aaccaattctctcaaaatcagtttttatcatctcaatactaaaaatacatttactctcatagtttcttagagtagcattttgaggcctatatgtacatgt 369998  T
Q  204 acaaaaacatggtatccgagcaatggtttttaactttgtctctctagacaacctaggtacaca---------agaactcccgtggagacttcaccaccca 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  369997 acaaaaacatggtatccgagcaatggtttttaactttgtctctctagacaacctaggtacacacacaccatgagaactcccgtggagacttcaccaccca 369898  T
Q  295 ccggtaggttcacttccagcaacctgcttgatgatctaaactctaaattacatgtttgtctttactggtggcatgaaaactgggtcaggacacgctacca 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  369897 ccggtaggttcacttccagcaacctgcttgatgatctaaactctaaattacatgtttgtctttactggtggcatgaaaactgggtcaggacacgctacca 369798  T
Q  395 ttgcacatgcagatccacaactatcattggatttgctgctacaatcacaatcatttgagccaacttaatatgatggctcctaaacacttagtgacttagg 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  369797 ttgcacatgcagatccacaactatcattggatttgctgctacaatcacaatcatttgagccaacttaatatgatggctcctaaacacttagtgacttagg 369698  T
Q  495 tatcctt 501  Q
    |||||||    
T  369697 tatcctt 369691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 14949608 - 14949646
Alignment:
Q  5 cctatcaaagccttgcctggcctgacctattccaacccc 43  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  14949608 cctatcaaagcctggcctggcctgacctattcccacccc 14949646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 11877503 - 11877470
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattcc 37  Q
    |||||||||||||| |||||||||||||||||||    
T  11877503 gcctatcaaagcctggcctggcctgacctattcc 11877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 18158419 - 18158386
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattcc 37  Q
    |||||||||||||| |||||||||||||||||||    
T  18158419 gcctatcaaagcctggcctggcctgacctattcc 18158386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 12638026 - 12637987
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattccaacccc 43  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  12638026 gcctatcaaagcctggcctggcctgacctattcccacccc 12637987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10805061 - 10805019
Alignment:
Q  1 catgcctatcaaagccttgcctggcctgacctattccaacccc 43  Q
    ||||||||||||||||| |||||||||| |||||||| |||||    
T  10805061 catgcctatcaaagcctggcctggcctggcctattcccacccc 10805019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 18353129 - 18353096
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattcc 37  Q
    |||||||||||||| |||||||||||||||||||    
T  18353129 gcctatcaaagcctggcctggcctgacctattcc 18353096  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 40412852 - 40412885
Alignment:
Q  4 gcctatcaaagccttgcctggcctgacctattcc 37  Q
    |||||||||||||| |||||||||||||||||||    
T  40412852 gcctatcaaagcctggcctggcctgacctattcc 40412885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8753867 - 8753903
Alignment:
Q  1 catgcctatcaaagccttgcctggcctgacctattcc 37  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  8753867 catgcctatcaaagcctggcctggcctggcctattcc 8753903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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