View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3925_high_9 (Length: 338)
Name: NF3925_high_9
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3925_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 1347043 - 1346730
Alignment:
| Q |
15 |
atacacaattttcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1347043 |
atacacaattttcttcatgacttgtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttg |
1346944 |
T |
|
| Q |
115 |
caaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1346943 |
caaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctt |
1346844 |
T |
|
| Q |
215 |
tgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1346843 |
tgttgttatagcatggaaactcttttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatct |
1346744 |
T |
|
| Q |
315 |
ttgtttggtctgtg |
328 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
1346743 |
ttgtttggtttgtg |
1346730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
181 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
279 |
Q |
| |
|
|||||||||||| ||||| ||| |||| || |||||||||||||||||||| | || |||| |||| ||| || ||| |||||||||||| |||||| |
|
|
| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
|
| Q |
280 |
aagcttt |
286 |
Q |
| |
|
||||||| |
|
|
| T |
19652921 |
aagcttt |
19652915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 19807813 - 19807927
Alignment:
| Q |
69 |
gaccaacgtatccattcgtaaaaaatcatga---atactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
165 |
Q |
| |
|
||||||| | ||||||||| |||||| |||| |||||||||| |||| || |||||||| |||||||| | ||||||||| |||||||| | ||| |
|
|
| T |
19807813 |
gaccaacttgtccattcgtgaaaaataatgacaaatactttcatctttgaaatgttcaatcaactcaaattgtctttttaagccacgcaaccttgtccgt |
19807912 |
T |
|
| Q |
166 |
taaattggatctgct |
180 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
19807913 |
tatgttggatctgct |
19807927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 40036781 - 40036960
Alignment:
| Q |
52 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
151 |
Q |
| |
|
|||||||| | || |||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
40036781 |
ttattcttggttttattgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtctt |
40036880 |
T |
|
| Q |
152 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgttatagcatgg |
230 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||| |||| ||| |||||||||||||| |
|
|
| T |
40036881 |
gcaacctttttcgttaaattggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg |
40036960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 40031437 - 40031623
Alignment:
| Q |
52 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
151 |
Q |
| |
|
|||||||||| || ||||||||| ||||| ||| ||||||||||| ||||| ||| || |||| |||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
40031437 |
ttattcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtctt |
40031536 |
T |
|
| Q |
152 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgt--tatagcatggaaact |
235 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||| ||||||||| | | ||||||||||||||| |
|
|
| T |
40031537 |
gcaacctttttctttaaactggatttgctccatgtgttttgagcataatttcccaagcttgctttgctattatatagcatggaaact |
40031623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University