View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3925_low_4 (Length: 466)
Name: NF3925_low_4
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3925_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 1347735 - 1347275
Alignment:
| Q |
18 |
atttccgatttgcaacctatatattgaagaatgcaaaactgttacaggttatgaatatttcccatactagttactcagcttcaacggagggctcccaatt |
117 |
Q |
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| T |
1347735 |
atttccgatttgcaacctatatattgaagaatgcaaaactgttacaggttatgaatatttcccatactagttactcagcttcaacggagagctcccattt |
1347636 |
T |
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| Q |
118 |
tttagaagatttatcttcctgtcctaggatctctcgtgtttgtaagttgtcggtgatatgaatatttcctagatgtatacttggttttttcttaattttc |
217 |
Q |
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| T |
1347635 |
tttagaagatttatcttcctgtcctaggatctctcgtgtttgtaagttgttggtgatatgaatatttcctagatatatacttggtgttttcttaattttc |
1347536 |
T |
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| Q |
218 |
tatacctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataactac |
317 |
Q |
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| T |
1347535 |
tatacctgctactattggatttgatggtttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtacacttaataactac |
1347436 |
T |
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| Q |
318 |
gcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaacaatttgtggctg------------tgtccatatttcttgcattcatga |
405 |
Q |
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| T |
1347435 |
gcgatatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaacaatttgttgctgatatatatattatgtccatatttcttgcattcatga |
1347336 |
T |
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| Q |
406 |
cactgctttattttgcacagagccattacctcttgttccattgcttgagttagttctacct |
466 |
Q |
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| T |
1347335 |
cactgctttattttgcacagagccattacctctagttccattgcttgagttagttctacct |
1347275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
236 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
334 |
Q |
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| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
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| Q |
335 |
tagcatttttcgtaacca |
352 |
Q |
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| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 9619327 - 9619439
Alignment:
| Q |
270 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
369 |
Q |
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| T |
9619327 |
ttatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaat |
9619426 |
T |
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| Q |
370 |
aatttgtggctgt |
382 |
Q |
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| T |
9619427 |
aatttgtggctgt |
9619439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
245 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
316 |
Q |
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| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 32241623 - 32241587
Alignment:
| Q |
116 |
tttttagaagatttatcttcctgtcctaggatctctc |
152 |
Q |
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| T |
32241623 |
tttttagaagatttatcctcctgtccaaggatctctc |
32241587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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