View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3925_low_5 (Length: 426)
Name: NF3925_low_5
Description: NF3925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3925_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 41623332 - 41623728
Alignment:
| Q |
18 |
gaatgcaagatttaaaggtagc---tatgttgagtctttttctggagctaactaagtctcacaaacagaaatttttcatgtttctaagcatgtctttcat |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41623332 |
gaatgcaagatttaaaggtagcagctatgttgagtctttttctggagctaactaagtctcacaaacagaaatttttcatgtttctaagcatgtcttgcat |
41623431 |
T |
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| Q |
115 |
tcatttcttacctaaagttaagtcaaagtagtcctcaaaatggaagagccatgtaatgcaagtaaagcacattagtgtctacccttctatttttccatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623432 |
tcatttcttacctaaagttaagtcaaagtagtcctcaaaatggaagagccatgtaatgcaagtaaagcacattagtgtctacccttctatttttccatgt |
41623531 |
T |
|
| Q |
215 |
tacagcagcagcagtgtctttcctgccagaaggaaaataaacaaaagtgaaaagataaagaaaagttttaccactttatgcttgttgttggatcagcatt |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623532 |
tacagcagcagtagtgtctttcctgccagaaggaaaataaacaaaagtgaaaagataaagaaaagttttaccactttatgcttgttgttggatcagcatt |
41623631 |
T |
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| Q |
315 |
tactatttgttattcagtttgcactttctgtcacaaggcgtgaatgatgtaaagtaccgtttttgaaatttgaatcacggttataacctctacttat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623632 |
tactatttgttattcagtttgcactttctgtcacaaggcgtgaatgatgtaaagtaccgtttttgaaatttgaatcacggttataacctctacttat |
41623728 |
T |
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